| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00056855m |
| Family | CE8 |
| Protein Properties | Length: 666 Molecular Weight: 72478 Isoelectric Point: 9.4217 |
| Chromosome | Chromosome/Scaffold: 078810 Start: 344 End: 2465 |
| Description | Plant invertase/pectin methylesterase inhibitor superfamily |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| CE8 | 351 | 647 | 0 |
| NVVVAKDGSGKFKTINDALNAMPAKYTGRYLIYVKQGVYEEYVTITRAMENVTMYGDGAMKTIITGSRNFADGLTTYKTATFNAQGDGFIAIALGFRNTA GAAKHQAVALLVQSDRSIFLNCRMEAYQDTLYAHSKAQFYRNCVVSGTIDFVFGDAAAVFQNCILVLRRPMDSQQNIATAQGRADGRESTGFVFQYCRFT AEAALRDASRPAIRSYLARPWREFSRTLIMESEIPAFIDRAGYLPWNGDFGLKTLWYAEYANRGPGADTAGRVTWPGYKKVISKDEAAKFTVQSFLH | |||
| Full Sequence |
|---|
| Protein Sequence Length: 666 Download |
| MSAAFSDFGP LTERRRVEKQ RQQRRRVMFA AAGTSVVLIL IVMGGAAVAY NASVQDEESD 60 ADSSSSSPSS PSGGGSGSSL ISVSKSVKVM CAQTDHRDAC EKSLSKAANA SASSPKDMVR 120 AAVAVIGDAV GKAFDQSALA TGDDPRVKAA VADCKEIYQN AKADLARTLR SIDARGMDEV 180 TKRGYELRVW LSAVIAHMET CIDGFPDGDL KKNMTATMES GKELTSNALA IIEKASSFLA 240 ALHVTAGAAS HRRLLSIREG EDVEKQPKVN HSGTFLGERG DSPAPDDSSR RRLLGIREGE 300 DVEKQPKPGA RHSRRRRLLG VEDDDDTPPW VKGPERRLLK GSNFQSRLTP NVVVAKDGSG 360 KFKTINDALN AMPAKYTGRY LIYVKQGVYE EYVTITRAME NVTMYGDGAM KTIITGSRNF 420 ADGLTTYKTA TFNAQGDGFI AIALGFRNTA GAAKHQAVAL LVQSDRSIFL NCRMEAYQDT 480 LYAHSKAQFY RNCVVSGTID FVFGDAAAVF QNCILVLRRP MDSQQNIATA QGRADGREST 540 GFVFQYCRFT AEAALRDASR PAIRSYLARP WREFSRTLIM ESEIPAFIDR AGYLPWNGDF 600 GLKTLWYAEY ANRGPGADTA GRVTWPGYKK VISKDEAAKF TVQSFLHAEP WLKPAGAPVK 660 YGFWA* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
 | ||||||||
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02217 | PLN02217 | 3.0e-140 | 34 | 665 | 641 | + probable pectinesterase/pectinesterase inhibitor | ||
| PLN02314 | PLN02314 | 1.0e-141 | 33 | 658 | 639 | + pectinesterase | ||
| PLN02468 | PLN02468 | 4.0e-142 | 82 | 663 | 586 | + putative pectinesterase/pectinesterase inhibitor | ||
| pfam01095 | Pectinesterase | 2.0e-179 | 351 | 646 | 296 | + Pectinesterase. | ||
| PLN02745 | PLN02745 | 0 | 4 | 664 | 665 | + Putative pectinesterase/pectinesterase inhibitor | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004857 | enzyme inhibitor activity |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACN34013.1 | 0 | 2 | 664 | 3 | 629 | unknown [Zea mays] |
| GenBank | EAZ07185.1 | 0 | 1 | 665 | 1 | 663 | hypothetical protein OsI_29431 [Oryza sativa Indica Group] |
| GenBank | EAZ42935.1 | 0 | 1 | 665 | 1 | 649 | hypothetical protein OsJ_27525 [Oryza sativa Japonica Group] |
| RefSeq | NP_001061941.1 | 0 | 1 | 665 | 1 | 664 | Os08g0450200 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002445591.1 | 0 | 1 | 665 | 1 | 626 | hypothetical protein SORBIDRAFT_07g022100 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1gq8_A | 0 | 346 | 663 | 3 | 319 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1xg2_A | 0 | 348 | 656 | 1 | 308 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 1qjv_B | 4e-20 | 349 | 572 | 3 | 246 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| PDB | 1qjv_A | 4e-20 | 349 | 572 | 3 | 246 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| PDB | 2ntq_B | 4e-20 | 349 | 572 | 3 | 246 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
