| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00056856m |
| Family | CE8 |
| Protein Properties | Length: 264 Molecular Weight: 28895.7 Isoelectric Point: 9.6866 |
| Chromosome | Chromosome/Scaffold: 078810 Start: 3221 End: 4012 |
| Description | Plant invertase/pectin methylesterase inhibitor superfamily |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| CE8 | 19 | 245 | 0 |
| RRSSAAVNGRGFIARDLTFENTAGPAKHQAVALRCDSDLSVFYRCAFEGYQDTLYAHSLRHFYRDCRVTGTVDFVFGNAAAVFQGCLLLARLPLPAQKNS VTAQGRLDANMTTGFAFQFCNVSAHDELLAASSGAGNGTAAAAQTYLGRPWKEYSRVVFMQSYIGAAVRPEGWLAWDGEFALDTLYYGEYRNTGPGAGVG ARVRWPGFHVMTSPAEAGNFTVAQFIG | |||
| Full Sequence |
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| Protein Sequence Length: 264 Download |
| MRTNFLTRFR FLHPLRRRRR SSAAVNGRGF IARDLTFENT AGPAKHQAVA LRCDSDLSVF 60 YRCAFEGYQD TLYAHSLRHF YRDCRVTGTV DFVFGNAAAV FQGCLLLARL PLPAQKNSVT 120 AQGRLDANMT TGFAFQFCNV SAHDELLAAS SGAGNGTAAA AQTYLGRPWK EYSRVVFMQS 180 YIGAAVRPEG WLAWDGEFAL DTLYYGEYRN TGPGAGVGAR VRWPGFHVMT SPAEAGNFTV 240 AQFIGGNMWL PPTGVKYTAG LTS* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02506 | PLN02506 | 3.0e-110 | 21 | 263 | 243 | + putative pectinesterase/pectinesterase inhibitor | ||
| PLN02713 | PLN02713 | 5.0e-117 | 24 | 263 | 240 | + Probable pectinesterase/pectinesterase inhibitor | ||
| PLN02301 | PLN02301 | 6.0e-119 | 21 | 261 | 241 | + pectinesterase/pectinesterase inhibitor | ||
| PLN02201 | PLN02201 | 3.0e-134 | 24 | 263 | 240 | + probable pectinesterase/pectinesterase inhibitor | ||
| pfam01095 | Pectinesterase | 1.0e-141 | 24 | 247 | 224 | + Pectinesterase. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | EAZ07184.1 | 0 | 19 | 263 | 311 | 560 | hypothetical protein OsI_29430 [Oryza sativa Indica Group] |
| GenBank | EAZ42934.1 | 0 | 31 | 263 | 1 | 235 | hypothetical protein OsJ_27524 [Oryza sativa Japonica Group] |
| RefSeq | NP_001061940.1 | 0 | 19 | 263 | 311 | 557 | Os08g0450100 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001147569.1 | 0 | 19 | 263 | 310 | 559 | pectinesterase PPE8B [Zea mays] |
| RefSeq | XP_002444448.1 | 0 | 19 | 263 | 338 | 584 | hypothetical protein SORBIDRAFT_07g022090 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1xg2_A | 0 | 19 | 261 | 81 | 315 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 1gq8_A | 0 | 21 | 261 | 87 | 319 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1qjv_B | 0.000000000000007 | 21 | 251 | 89 | 339 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| PDB | 1qjv_A | 0.000000000000007 | 21 | 251 | 89 | 339 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| PDB | 2ntq_B | 0.00000000000001 | 21 | 251 | 89 | 339 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| FE646646 | 239 | 22 | 260 | 0 |
| DT730044 | 239 | 24 | 262 | 0 |
| DY361529 | 239 | 24 | 262 | 0 |
| FL740912 | 193 | 72 | 264 | 0 |
| DR925008 | 239 | 24 | 262 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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