| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00056898m |
| Family | GH51 |
| Protein Properties | Length: 412 Molecular Weight: 45824.3 Isoelectric Point: 4.7797 |
| Chromosome | Chromosome/Scaffold: 078575 Start: 3 End: 4081 |
| Description | alpha-L-arabinofuranosidase 1 |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH51 | 140 | 408 | 0 |
| LQNLASTTITVSGTSNWTKVEQKLVANGTNRTSRLQITTNKKGVVWFDQVSLMPEDTYKGHGFRTELISMLLDLKPRFLRFPGGCFVEGDWLRNAFRWRE SIGPWEERPGHFGDVWHYWTDDGLGYYEFLQLAEDLGAAPIWVFNNGSFHSHDCSLIAVELFAFLQDVLDSLEFARGSADSTWGSVRAAMGHPEPFPVKY VAIGNEDCGKKFTAFYNAIRQAYPDIQMISNCDGSSRPLDHPADLYDFHVYTDSKTLFNMRSTFDSTSR | |||
| Full Sequence |
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| Protein Sequence Length: 412 Download |
| TLNVDASPQS ARKIPETLFG IFFEEINHAG AGGIWAELVS NRGFEAGGPH TPSNIDPWSI 60 IGDDSSVFVA TDRTSCFSRN IVALRMEVLC DDCPTGGVGI YNPGFWGMNI EDGKAYNLVM 120 YVKSPETTDL TVSLTSSDGL QNLASTTITV SGTSNWTKVE QKLVANGTNR TSRLQITTNK 180 KGVVWFDQVS LMPEDTYKGH GFRTELISML LDLKPRFLRF PGGCFVEGDW LRNAFRWRES 240 IGPWEERPGH FGDVWHYWTD DGLGYYEFLQ LAEDLGAAPI WVFNNGSFHS HDCSLIAVEL 300 FAFLQDVLDS LEFARGSADS TWGSVRAAMG HPEPFPVKYV AIGNEDCGKK FTAFYNAIRQ 360 AYPDIQMISN CDGSSRPLDH PADLYDFHVY TDSKTLFNMR STFDSTSRSG PK 420 |
| Functional Domains Download unfiltered results here | ||||||
|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
| COG3534 | AbfA | 1.0e-30 | 201 | 355 | 160 | + Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism] |
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0016798 | hydrolase activity, acting on glycosyl bonds |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACN27961.1 | 0 | 2 | 412 | 37 | 450 | unknown [Zea mays] |
| GenBank | ACN33779.1 | 0 | 1 | 412 | 60 | 474 | unknown [Zea mays] |
| GenBank | EEC67598.1 | 0 | 1 | 412 | 38 | 452 | hypothetical protein OsI_34967 [Oryza sativa Indica Group] |
| RefSeq | NP_001148977.1 | 0 | 1 | 412 | 60 | 474 | alpha-N-arabinofuranosidase A [Zea mays] |
| RefSeq | XP_002442705.1 | 0 | 1 | 412 | 36 | 450 | hypothetical protein SORBIDRAFT_08g001540 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3s2c_L | 3e-16 | 201 | 402 | 48 | 249 | A Chain A, Structure Of The Thermostable Gh51 Alpha-L-Arabinofuranosidase From Thermotoga Petrophila Rku-1 |
| PDB | 3s2c_K | 3e-16 | 201 | 402 | 48 | 249 | A Chain A, Structure Of The Thermostable Gh51 Alpha-L-Arabinofuranosidase From Thermotoga Petrophila Rku-1 |
| PDB | 3s2c_J | 3e-16 | 201 | 402 | 48 | 249 | A Chain A, Structure Of The Thermostable Gh51 Alpha-L-Arabinofuranosidase From Thermotoga Petrophila Rku-1 |
| PDB | 3s2c_I | 3e-16 | 201 | 402 | 48 | 249 | A Chain A, Structure Of The Thermostable Gh51 Alpha-L-Arabinofuranosidase From Thermotoga Petrophila Rku-1 |
| PDB | 3s2c_H | 3e-16 | 201 | 402 | 48 | 249 | A Chain A, Structure Of The Thermostable Gh51 Alpha-L-Arabinofuranosidase From Thermotoga Petrophila Rku-1 |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| GO801860 | 331 | 54 | 379 | 0 |
| GT036166 | 323 | 1 | 323 | 0 |
| JG860201 | 279 | 139 | 412 | 0 |
| CJ706176 | 286 | 61 | 346 | 0 |
| CB651548 | 280 | 23 | 302 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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