| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00057044m |
| Family | GT5 |
| Protein Properties | Length: 606 Molecular Weight: 65832.5 Isoelectric Point: 8.3169 |
| Chromosome | Chromosome/Scaffold: 028460 Start: 1 End: 3358 |
| Description | UDP-Glycosyltransferase superfamily protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GT5 | 80 | 577 | 0 |
| NVVFVGAEMAPWSKTGGLGDVLGGLPPAMAANGHRVMVISPRYDQYKDAWDTSVVSEIKVGDRDETVRFFHCYKRGVDRVFIDHPSFLERVWGKTGEKIY GPDAGVDYKDNQLRFSLLCQAALEAPRILSLNNNPYFSGPYGEDVVFVCNDWHTGPLSSYLKSNYQSNGIYRNAKTAFCIHNISYQGRFAFSDYPELNLP ERFRSSFDFIDGYEKPVEGRKINWMKGGILEADKVLTVSPYYAEELISGIARGCELDNIMRLTGITGIVNGMDVSEWDPSKDKYIATKYDVSTAIAAKAL NKEALQAAAGLPVDRKIPLVAFVGRLEEQKGPDVMAAAIPQLMEEDVQIVLLGTGKKKFERMLMGAEEKYPDKVRAVVKFNAALAHHIMAGADLLAVTSR FEPCGLIQLQGMRYGTPCVCASTGGLVDTVIEGKTGFHMGRLSVDCKVVEPADVQKVASTLKRAIRVVGTPAYEEMVRNCMIQDLSWKGPAKNWEKVL | |||
| Full Sequence |
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| Protein Sequence Length: 606 Download |
| MAALATSQLA TTHAGFGLGG DTSMFRRGVQ GLRAPRTASA GALSVRTSAR AAPRQPQSRR 60 PQRGGGRFPS LVVCAAAGMN VVFVGAEMAP WSKTGGLGDV LGGLPPAMAA NGHRVMVISP 120 RYDQYKDAWD TSVVSEIKVG DRDETVRFFH CYKRGVDRVF IDHPSFLERV WGKTGEKIYG 180 PDAGVDYKDN QLRFSLLCQA ALEAPRILSL NNNPYFSGPY GEDVVFVCND WHTGPLSSYL 240 KSNYQSNGIY RNAKTAFCIH NISYQGRFAF SDYPELNLPE RFRSSFDFID GYEKPVEGRK 300 INWMKGGILE ADKVLTVSPY YAEELISGIA RGCELDNIMR LTGITGIVNG MDVSEWDPSK 360 DKYIATKYDV STAIAAKALN KEALQAAAGL PVDRKIPLVA FVGRLEEQKG PDVMAAAIPQ 420 LMEEDVQIVL LGTGKKKFER MLMGAEEKYP DKVRAVVKFN AALAHHIMAG ADLLAVTSRF 480 EPCGLIQLQG MRYGTPCVCA STGGLVDTVI EGKTGFHMGR LSVDCKVVEP ADVQKVASTL 540 KRAIRVVGTP AYEEMVRNCM IQDLSWKGPA KNWEKVLLSL GVAGSQPGIE GEEIAPLAKE 600 NVAAP* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PRK14099 | PRK14099 | 3.0e-81 | 79 | 587 | 532 | + glycogen synthase; Provisional | ||
| COG0297 | GlgA | 4.0e-109 | 79 | 575 | 516 | + Glycogen synthase [Carbohydrate transport and metabolism] | ||
| PRK00654 | glgA | 7.0e-136 | 79 | 576 | 509 | + glycogen synthase; Provisional | ||
| TIGR02095 | glgA | 5.0e-169 | 79 | 580 | 521 | + glycogen/starch synthase, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate [Energy metabolism, Biosynthesis and degradation of polysaccharides]. | ||
| cd03791 | GT1_Glycogen_synthase_DULL1_like | 2.0e-174 | 80 | 577 | 511 | + This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0009058 | biosynthetic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAQ06271.1 | 0 | 1 | 605 | 1 | 609 | granule-bound starch synthase precursor [Pennisetum glaucum] |
| GenBank | ABU98327.1 | 0 | 1 | 605 | 1 | 605 | granule-bound starch synthase I [Sarga leioclada] |
| GenBank | ADA61154.1 | 0 | 76 | 598 | 1 | 523 | granule bound starch synthase [Panicum miliaceum] |
| GenBank | ADA61162.1 | 0 | 76 | 598 | 1 | 523 | S-type granule bound starch synthase 1 [Panicum miliaceum] |
| DDBJ | BAC06486.1 | 0 | 1 | 605 | 1 | 605 | granule bound starch synthase [Setaria italica] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3vuf_A | 0 | 79 | 605 | 10 | 536 | A Chain A, The Structure Of Soybean Peroxidase |
| PDB | 3vue_A | 0 | 79 | 605 | 10 | 536 | A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I Catalytic Domain |
| PDB | 3d1j_A | 0 | 79 | 580 | 1 | 476 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 3guh_A | 0 | 79 | 580 | 1 | 476 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 2r4u_A | 0 | 79 | 580 | 1 | 476 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| starch biosynthesis | GLYCOGENSYN-RXN | EC-2.4.1.21 | starch synthase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| AJ568414 | 535 | 72 | 606 | 0 |
| HO825853 | 518 | 87 | 604 | 0 |
| HO629148 | 538 | 71 | 606 | 0 |
| DT643443 | 304 | 111 | 414 | 0 |
| DV516889 | 292 | 123 | 414 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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