y
Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00057104m |
Family | GH1 |
Protein Properties | Length: 292 Molecular Weight: 32899.2 Isoelectric Point: 6.3427 |
Chromosome | Chromosome/Scaffold: 0292097 Start: 3 End: 1446 |
Description | beta glucosidase 40 |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH1 | 2 | 292 | 0 |
GTGQVNQAGIDHYNKLIDALLAKAICNVTLYHWDLPQALEDRYNGWLDRQIVNDFAAYAEICFKAFGDRVKHWITLNEPHTVAIQGYDDGLQAPGRCSLL LHLYCKAGNSGTEPNIVAHNLLLAHATVSDIYRRNYKGTQNEELGIAFDVMWFEPMTNTTIDIEAAKRGQEFQLGWFADPFFFGDYPASMRSRVGDRLPK FTEDEAALVKGALDFVGINHYTKHNSTNIIGRLLHNTLADTGTISLPFRNGKPIGDRANSIWLYIVPSGMRSLMNYVKERYNNPPICITEN |
Full Sequence |
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Protein Sequence Length: 292 Download |
DGTGQVNQAG IDHYNKLIDA LLAKAICNVT LYHWDLPQAL EDRYNGWLDR QIVNDFAAYA 60 EICFKAFGDR VKHWITLNEP HTVAIQGYDD GLQAPGRCSL LLHLYCKAGN SGTEPNIVAH 120 NLLLAHATVS DIYRRNYKGT QNEELGIAFD VMWFEPMTNT TIDIEAAKRG QEFQLGWFAD 180 PFFFGDYPAS MRSRVGDRLP KFTEDEAALV KGALDFVGIN HYTKHNSTNI IGRLLHNTLA 240 DTGTISLPFR NGKPIGDRAN SIWLYIVPSG MRSLMNYVKE RYNNPPICIT EN 300 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
TIGR03356 | BGL | 5.0e-77 | 1 | 292 | 293 | + beta-galactosidase. | ||
PLN02814 | PLN02814 | 6.0e-79 | 1 | 292 | 298 | + beta-glucosidase | ||
PLN02998 | PLN02998 | 3.0e-79 | 2 | 292 | 296 | + beta-glucosidase | ||
PLN02849 | PLN02849 | 2.0e-82 | 1 | 292 | 293 | + beta-glucosidase | ||
pfam00232 | Glyco_hydro_1 | 2.0e-88 | 1 | 292 | 296 | + Glycosyl hydrolase family 1. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3GNO | 0 | 1 | 292 | 99 | 395 | A Chain A, Crystal Structure Of A Rice Os3bglu6 Beta-Glucosidase |
GenBank | EEC74750.1 | 0 | 1 | 292 | 132 | 428 | hypothetical protein OsI_10506 [Oryza sativa Indica Group] |
GenBank | EEE58575.1 | 0 | 1 | 292 | 132 | 428 | hypothetical protein OsJ_09895 [Oryza sativa Japonica Group] |
RefSeq | NP_001049358.1 | 0 | 1 | 292 | 132 | 428 | Os03g0212800 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002465651.1 | 0 | 1 | 292 | 117 | 414 | hypothetical protein SORBIDRAFT_01g043030 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3gnr_A | 0 | 1 | 292 | 99 | 395 | B Chain B, Structure Of A Cellulose Synthase - Cellulose Translocation Intermediate |
PDB | 3gnp_A | 0 | 1 | 292 | 99 | 395 | B Chain B, Structure Of A Cellulose Synthase - Cellulose Translocation Intermediate |
PDB | 3gno_A | 0 | 1 | 292 | 99 | 395 | A Chain A, Crystal Structure Of A Rice Os3bglu6 Beta-glucosidase |
PDB | 3ptq_B | 0 | 4 | 292 | 122 | 413 | A Chain A, Crystal Structure Of A Rice Os3bglu6 Beta-glucosidase |
PDB | 3ptq_A | 0 | 4 | 292 | 122 | 413 | A Chain A, Crystal Structure Of A Rice Os3bglu6 Beta-glucosidase |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
coumarin biosynthesis (via 2-coumarate) | RXN-8036 | EC-3.2.1.21 | β-glucosidase |
linamarin degradation | RXN-5341 | EC-3.2.1.21 | β-glucosidase |
linustatin bioactivation | RXN-13602 | EC-3.2.1.21 | β-glucosidase |
linustatin bioactivation | RXN-5341 | EC-3.2.1.21 | β-glucosidase |
lotaustralin degradation | RXN-9674 | EC-3.2.1.21 | β-glucosidase |
neolinustatin bioactivation | RXN-13603 | EC-3.2.1.21 | β-glucosidase |
neolinustatin bioactivation | RXN-9674 | EC-3.2.1.21 | β-glucosidase |
taxiphyllin bioactivation | RXN-13600 | EC-3.2.1.21 | β-glucosidase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
JG828910 | 220 | 44 | 263 | 0 |
CO467354 | 249 | 1 | 244 | 0 |
CD445171 | 221 | 1 | 220 | 0 |
DR808423 | 213 | 39 | 247 | 0 |
EE190553 | 205 | 92 | 292 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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