| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00057340m |
| Family | CE8 |
| Protein Properties | Length: 205 Molecular Weight: 23271.9 Isoelectric Point: 8.2171 |
| Chromosome | Chromosome/Scaffold: 0287902 Start: 277 End: 1200 |
| Description | pectin methylesterase 38 |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| CE8 | 13 | 201 | 0 |
| LGHGFLAQDLTIRNTAGPAQKQAVALRSNSNKSVVYRCSIEGYEDTLYAENGRQMYIESNISGTVDFVFGNAKAVFHKCRLQVRRPLEGKHNVITAQGRN NATSPESGFSIHQCIIEAAPGHDLKGFDTFLETIRTSHHQLIAGRRDQRYRVEWDRGHDVKETTKTVEYCEYDKYGPYVGTERRVRWDQ | |||
| Full Sequence |
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| Protein Sequence Length: 205 Download |
| NSGGEKEELE FALGHGFLAQ DLTIRNTAGP AQKQAVALRS NSNKSVVYRC SIEGYEDTLY 60 AENGRQMYIE SNISGTVDFV FGNAKAVFHK CRLQVRRPLE GKHNVITAQG RNNATSPESG 120 FSIHQCIIEA APGHDLKGFD TFLETIRTSH HQLIAGRRDQ RYRVEWDRGH DVKETTKTVE 180 YCEYDKYGPY VGTERRVRWD QGCKR |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02468 | PLN02468 | 6.0e-46 | 11 | 204 | 203 | + putative pectinesterase/pectinesterase inhibitor | ||
| PLN02301 | PLN02301 | 1.0e-46 | 12 | 200 | 200 | + pectinesterase/pectinesterase inhibitor | ||
| PLN02314 | PLN02314 | 4.0e-47 | 12 | 199 | 196 | + pectinesterase | ||
| PLN03043 | PLN03043 | 2.0e-48 | 11 | 199 | 202 | + Probable pectinesterase/pectinesterase inhibitor; Provisional | ||
| pfam01095 | Pectinesterase | 2.0e-60 | 12 | 204 | 201 | + Pectinesterase. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABA94334.1 | 0 | 12 | 200 | 142 | 335 | Pectinesterase family protein [Oryza sativa (japonica cultivar-group)] |
| DDBJ | BAH95129.1 | 0 | 14 | 199 | 17 | 208 | Os11g0194200 [Oryza sativa Japonica Group] |
| GenBank | EAY80256.1 | 0 | 14 | 199 | 150 | 341 | hypothetical protein OsI_35428 [Oryza sativa Indica Group] |
| GenBank | EAY81365.1 | 0 | 12 | 200 | 142 | 335 | hypothetical protein OsI_36536 [Oryza sativa Indica Group] |
| RefSeq | XP_002453066.1 | 0 | 12 | 199 | 131 | 337 | hypothetical protein SORBIDRAFT_04g037740 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1xg2_A | 3.99931e-42 | 12 | 199 | 87 | 277 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 1gq8_A | 5e-33 | 12 | 199 | 91 | 281 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 2ntq_B | 0.00000000008 | 17 | 96 | 98 | 193 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 2ntq_A | 0.00000000008 | 17 | 96 | 98 | 193 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 2ntp_B | 0.00000000008 | 17 | 96 | 98 | 193 | A Chain A, Pectin Methylesterase From Carrot |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
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| Hit | Length | Start | End | EValue |
| EX411522 | 198 | 12 | 199 | 2.00386e-43 |
| EX334448 | 198 | 12 | 199 | 5.99756e-43 |
| EX334231 | 198 | 12 | 199 | 5.99756e-43 |
| EX317221 | 198 | 12 | 199 | 7.00649e-43 |
| CO234279 | 198 | 12 | 199 | 1.00053e-42 |
| Orthologous Group | |||||
|---|---|---|---|---|---|
| Species | ID | ||||
| Oryza sativa | LOC_Os08g12410.1 | LOC_Os11g36240.1 | |||
| Setaria italica | Si022417m | Si019968m | Si025266m.144.297 | Si025266m.144.297 | |
| Sorghum bicolor | Sb05g000900.1 | Sb04g037740.1 | |||
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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