Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00057614m |
Family | CE8 |
Protein Properties | Length: 594 Molecular Weight: 62784.2 Isoelectric Point: 6.5107 |
Chromosome | Chromosome/Scaffold: 029060 Start: 1193 End: 2974 |
Description | pectin methylesterase PCR fragment F |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 279 | 577 | 0 |
DMVVAQDGSGTHLSIGDAVEAAPEYGSRRVVIYVKAGEYTENVRIGRSKTNLMLIGAGAGETLVVGRRSVEDGFKTFDTATVSVLADGFMMRDMTVENRA GAVRRQAVALLLSGDHAVAYRCAVLGYQDTLYAHAQRHFYGECEVAGTVDVVWGNAAAVLQNCTLRARRPMPGQKNTLTAQGRTDPNQSTGISLHRCRLL PAPELAAAAYPTPTYLGRPWKLYARVVYMVSFMAEHVAAAGWLAWDASGRAPDSTVYYGEYQNSGPGAAVAGRVAWPGLHVITLEAEAMEFTVGRFIDG |
Full Sequence |
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Protein Sequence Length: 594 Download |
MAHTIKLGSP EPTRSQRGCA AQSNRCRRLL ILVSVVSVAL AVGLAVSLAI FAVRRPSNRP 60 PSAGRGPTEA AITRACGVTR YPALCANELT KLPGAAAAGD AADLVPMSLD ATRRRVAGAL 120 SNASALAVGA PAAADCLELL DVAGELLERS VRAVAAASPA NSTDAAAAAH TDDDVMTWLS 180 AALTYYDTCH DRLQQAGADD DVRAQMLEYL TNLGEHLSNS LAIFKELGGG ISGVNRRRLL 240 LDASNNEDDD DDVGFVPPRW VKHSDRRLLV AAAADIVPDM VVAQDGSGTH LSIGDAVEAA 300 PEYGSRRVVI YVKAGEYTEN VRIGRSKTNL MLIGAGAGET LVVGRRSVED GFKTFDTATV 360 SVLADGFMMR DMTVENRAGA VRRQAVALLL SGDHAVAYRC AVLGYQDTLY AHAQRHFYGE 420 CEVAGTVDVV WGNAAAVLQN CTLRARRPMP GQKNTLTAQG RTDPNQSTGI SLHRCRLLPA 480 PELAAAAYPT PTYLGRPWKL YARVVYMVSF MAEHVAAAGW LAWDASGRAP DSTVYYGEYQ 540 NSGPGAAVAG RVAWPGLHVI TLEAEAMEFT VGRFIDGDSW LPPTGVAFVA GLT* 600 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02314 | PLN02314 | 1.0e-133 | 54 | 588 | 559 | + pectinesterase | ||
PLN02170 | PLN02170 | 8.0e-137 | 135 | 592 | 461 | + probable pectinesterase/pectinesterase inhibitor | ||
PLN02468 | PLN02468 | 5.0e-141 | 58 | 592 | 544 | + putative pectinesterase/pectinesterase inhibitor | ||
pfam01095 | Pectinesterase | 1.0e-152 | 279 | 578 | 300 | + Pectinesterase. | ||
PLN02484 | PLN02484 | 2.0e-169 | 6 | 593 | 605 | + probable pectinesterase/pectinesterase inhibitor |
Gene Ontology | |
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GO Term | Description |
GO:0004857 | enzyme inhibitor activity |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABJ99594.1 | 0 | 1 | 593 | 1 | 579 | pectinesterase inhibitor [Lycoris aurea] |
GenBank | ABJ99595.1 | 0 | 1 | 593 | 1 | 579 | pectinesterase inhibitor [Lycoris aurea] |
DDBJ | BAH90975.1 | 0 | 64 | 593 | 69 | 620 | Os01g0234300 [Oryza sativa Japonica Group] |
GenBank | EEE54187.1 | 0 | 139 | 593 | 1 | 446 | hypothetical protein OsJ_01013 [Oryza sativa Japonica Group] |
RefSeq | XP_002457060.1 | 0 | 1 | 593 | 1 | 594 | hypothetical protein SORBIDRAFT_03g000660 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 278 | 592 | 7 | 319 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 0 | 276 | 592 | 1 | 315 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 1qjv_B | 5e-21 | 283 | 582 | 12 | 339 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 1qjv_A | 5e-21 | 283 | 582 | 12 | 339 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 2ntq_B | 1e-20 | 283 | 582 | 12 | 339 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |