| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00057767m |
| Family | CE8 |
| Protein Properties | Length: 783 Molecular Weight: 85260.8 Isoelectric Point: 5.8751 |
| Chromosome | Chromosome/Scaffold: 028547 Start: 820 End: 3247 |
| Description | Plant invertase/pectin methylesterase inhibitor superfamily |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| CE8 | 470 | 764 | 0 |
| AVVAQDGSGGFKSITAAINAVPKTYEGRYVIYVKAGIYKEYVTVPKNMANVFMYGDGPSKTVVTGDKSNAGGFATIATRTFSAEGNGFICKNMGFQNTAG PDGHQAVAMHVQGDMSVFFNCRFEGYQDTLYVHANRQFFRNCEVLGTIDFIFGNSAALFQNCLMTVRKPGLSQSNMVTAQGRTDPNMPTGIVLQSCRIVP EQALFPDRLTVASYLGRPWKEYARTVIMESTIGDLIKPEGWSEWMGDIGLKTLYYAEYANTGPGAGTSKRVNWPGYRGVIGQAEATQFTAGVFID | |||
| Full Sequence |
|---|
| Protein Sequence Length: 783 Download |
| MANKIAVASV IAAVGIVAVI GTIAAVTASK KGGDKDGGMS AGVKLSTVCA STLYPEKCEQ 60 SLNPVVNDTS NPEDILRAAL NVALDEVAAA FERSEHIGKD AKDNLTRNAM DVCKKLLDDA 120 TEDLRDMARL KPVEMLDHVK DLRVWLSGVM TYVYTCADGF EMPELKEAMD KVLQNSTELS 180 SNALAIITRL GELLPEEAKK VNATAAAGHG RRLLGWQMGE AEEKTSGGRG LPAADDKLNE 240 IADVTEASRQ LLADTLDEIE ALSDDASRRQ LGLMFAKLYS RGDLLWRRRH LLSMSLTVMT 300 SADDERRIRL SHHLHTIANM STETNRQLVA EELPGDLDGR RQVLSRRLMG INEVADEAKR 360 QLEANAHGDP EEHRVLMTAG GLVGTFDGIE DGRSGLKSSD LPKSAPANQR RLMQLPGGQQ 420 KPNSRLLTTD LVGTPDEIED DALKRQSSDD LPEWVPRDLR RLLQIQKPNA VVAQDGSGGF 480 KSITAAINAV PKTYEGRYVI YVKAGIYKEY VTVPKNMANV FMYGDGPSKT VVTGDKSNAG 540 GFATIATRTF SAEGNGFICK NMGFQNTAGP DGHQAVAMHV QGDMSVFFNC RFEGYQDTLY 600 VHANRQFFRN CEVLGTIDFI FGNSAALFQN CLMTVRKPGL SQSNMVTAQG RTDPNMPTGI 660 VLQSCRIVPE QALFPDRLTV ASYLGRPWKE YARTVIMEST IGDLIKPEGW SEWMGDIGLK 720 TLYYAEYANT GPGAGTSKRV NWPGYRGVIG QAEATQFTAG VFIDAMTWLK ATGTPNVMGF 780 TK* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02301 | PLN02301 | 7.0e-5 | 45 | 187 | 147 | + pectinesterase/pectinesterase inhibitor | ||
| PLN02745 | PLN02745 | 9.0e-24 | 45 | 194 | 156 | + Putative pectinesterase/pectinesterase inhibitor | ||
| PLN02301 | PLN02301 | 9.0e-136 | 441 | 773 | 337 | + pectinesterase/pectinesterase inhibitor | ||
| PLN02745 | PLN02745 | 1.0e-162 | 449 | 779 | 336 | + Putative pectinesterase/pectinesterase inhibitor | ||
| pfam01095 | Pectinesterase | 0 | 469 | 766 | 298 | + Pectinesterase. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004857 | enzyme inhibitor activity |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAC09455.2 | 0 | 261 | 782 | 226 | 717 | H0423H10.1 [Oryza sativa (indica cultivar-group)] |
| EMBL | CAH68135.1 | 0 | 34 | 313 | 32 | 310 | B0414F07.5 [Oryza sativa (indica cultivar-group)] |
| EMBL | CAH68135.1 | 0 | 261 | 782 | 480 | 971 | B0414F07.5 [Oryza sativa (indica cultivar-group)] |
| RefSeq | NP_001145377.1 | 0 | 34 | 782 | 31 | 727 | hypothetical protein LOC100278720 [Zea mays] |
| RefSeq | XP_002447200.1 | 0 | 30 | 782 | 30 | 739 | hypothetical protein SORBIDRAFT_06g030310 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1xg2_A | 0 | 469 | 780 | 4 | 315 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 1gq8_A | 0 | 468 | 779 | 7 | 318 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1qjv_B | 9e-25 | 469 | 758 | 5 | 329 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| PDB | 1qjv_A | 9e-25 | 469 | 758 | 5 | 329 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| PDB | 2ntq_B | 2e-24 | 469 | 758 | 5 | 329 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
