Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00058217m |
Family | GH28 |
Protein Properties | Length: 415 Molecular Weight: 43175.4 Isoelectric Point: 7.9413 |
Chromosome | Chromosome/Scaffold: 0199456 Start: 119 End: 1799 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 71 | 403 | 0 |
TSACGGTGKQKIMIPKGDFLVGPLNFTGPCKGDVTIQLDGNLLASTDLSQYKGNWIEILRVDNLVITGKGTLDGQGPAVWSKNSCAKKYDCKILPNSLVL DFVNNGEVSGITLLNSKFFHMNVFQCKDMVIKDVTVTAPGDSPNTDGIHMGDSSGVTISNTVIGVGDDCISIGPGSTKVNITGVTCGPGHGISIGSLGRY KDEKDVTDINVKDCTFKKSTNGLRIKAYEDAKSVLTASKIHYENIKMEDAANPIIIDMKYCPNKICTASGGSKVTVKDVSFKNITGTSSTPEAVSLLCTD KIPCSGVTMDNVKVEYSGKNNKTMAVCNNAKGS |
Full Sequence |
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Protein Sequence Length: 415 Download |
MAFPNNTMLR TLFLLVLVCA AHAGGKAKES SSAPAGGGGG SCDGGTCDIT KMGATAGGKT 60 DSTKAVQEAW TSACGGTGKQ KIMIPKGDFL VGPLNFTGPC KGDVTIQLDG NLLASTDLSQ 120 YKGNWIEILR VDNLVITGKG TLDGQGPAVW SKNSCAKKYD CKILPNSLVL DFVNNGEVSG 180 ITLLNSKFFH MNVFQCKDMV IKDVTVTAPG DSPNTDGIHM GDSSGVTISN TVIGVGDDCI 240 SIGPGSTKVN ITGVTCGPGH GISIGSLGRY KDEKDVTDIN VKDCTFKKST NGLRIKAYED 300 AKSVLTASKI HYENIKMEDA ANPIIIDMKY CPNKICTASG GSKVTVKDVS FKNITGTSST 360 PEAVSLLCTD KIPCSGVTMD NVKVEYSGKN NKTMAVCNNA KGSSTGCLKE LACL* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02155 | PLN02155 | 3.0e-78 | 48 | 414 | 370 | + polygalacturonase | ||
PLN02218 | PLN02218 | 4.0e-80 | 46 | 400 | 362 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 2.0e-86 | 49 | 414 | 374 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 4.0e-126 | 74 | 401 | 328 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 2.0e-127 | 46 | 406 | 363 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAA40851.1 | 0 | 6 | 414 | 3 | 408 | polygalacturonase [Zea mays] |
EMBL | CAA40910.1 | 0 | 6 | 414 | 1 | 406 | polygalacturonase [Zea mays] |
EMBL | CAA46680.1 | 0 | 1 | 414 | 1 | 410 | polygalacturonase [Zea mays] |
RefSeq | NP_001105432.1 | 0 | 1 | 414 | 1 | 410 | exopolygalacturonase precursor [Zea mays] |
RefSeq | XP_002437275.1 | 0 | 1 | 414 | 1 | 410 | hypothetical protein SORBIDRAFT_10g024010 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 8e-19 | 125 | 384 | 102 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 1e-18 | 82 | 399 | 26 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 1e-18 | 82 | 399 | 26 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 1e-18 | 82 | 399 | 26 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 1e-18 | 82 | 399 | 26 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |