Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00058435m |
Family | GH28 |
Protein Properties | Length: 491 Molecular Weight: 52897.6 Isoelectric Point: 6.9251 |
Chromosome | Chromosome/Scaffold: 019946 Start: 4775 End: 8397 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 84 | 425 | 0 |
ANKGGAQLFVPAGRWLTGSFSLISHLTLSLDKDAVILGSPDSSDWPVIDALPSYGRGRELPGKRHQSLIFGSNLTDVIITGTNGTIDGQGAIWWDWFHNH TLNYTRPPLVELMYSTRVIISNLTFINSPFWNIHPVYCSQVLVQHLTILAPISSPNTDGIDPDSSTNVCIEDCYIRNGDDIVVIKSGWDEYGISFAHPSS NISICNITGQTRNSAGIAFGSEMSGGISNVRAEGIHIVNSVHGIRIKTAPGRGGYVKNVYVADVSLDNVSIAIRITGNYGEHPDENYNKNALPTISNITI KNIVGVNIGVAGMLQGISGDNFSNICLSNVSLSVRSTNPWNC |
Full Sequence |
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Protein Sequence Length: 491 Download |
MFVSPNRKMS RSASTFQVLL VLATIVAQTQ WARASVSGMH CNDLTPSVER PHSASITDFG 60 AVGDGTTLNT KAFQNALFYL NSFANKGGAQ LFVPAGRWLT GSFSLISHLT LSLDKDAVIL 120 GSPDSSDWPV IDALPSYGRG RELPGKRHQS LIFGSNLTDV IITGTNGTID GQGAIWWDWF 180 HNHTLNYTRP PLVELMYSTR VIISNLTFIN SPFWNIHPVY CSQVLVQHLT ILAPISSPNT 240 DGIDPDSSTN VCIEDCYIRN GDDIVVIKSG WDEYGISFAH PSSNISICNI TGQTRNSAGI 300 AFGSEMSGGI SNVRAEGIHI VNSVHGIRIK TAPGRGGYVK NVYVADVSLD NVSIAIRITG 360 NYGEHPDENY NKNALPTISN ITIKNIVGVN IGVAGMLQGI SGDNFSNICL SNVSLSVRST 420 NPWNCSLVEG YSNSVSPEIC EQLRKGPGPG QVCYDGNSYP AAAAQPQSPQ KSSASRLVNP 480 FFCTSWFLCR * |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 2.0e-24 | 47 | 390 | 360 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 9.0e-25 | 50 | 388 | 353 | + Probable polygalacturonase | ||
PLN03003 | PLN03003 | 1.0e-30 | 56 | 390 | 347 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 6.0e-34 | 152 | 426 | 285 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 4.0e-53 | 54 | 366 | 336 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACR35653.1 | 0 | 6 | 490 | 5 | 490 | unknown [Zea mays] |
GenBank | EEC81792.1 | 0 | 3 | 482 | 24 | 499 | hypothetical protein OsI_25505 [Oryza sativa Indica Group] |
GenBank | EEE66877.1 | 0 | 3 | 482 | 24 | 499 | hypothetical protein OsJ_23693 [Oryza sativa Japonica Group] |
RefSeq | NP_001059282.1 | 0 | 9 | 482 | 2 | 439 | Os07g0245200 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002459610.1 | 0 | 2 | 490 | 1 | 499 | hypothetical protein SORBIDRAFT_02g007470 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 1.00053e-42 | 52 | 412 | 26 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 1.00053e-42 | 52 | 412 | 26 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 1.00053e-42 | 52 | 412 | 26 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 1.00053e-42 | 52 | 412 | 26 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 1e-19 | 98 | 420 | 52 | 366 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |