| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00058605m |
| Family | CE8 |
| Protein Properties | Length: 414 Molecular Weight: 43453.7 Isoelectric Point: 8.6243 |
| Chromosome | Chromosome/Scaffold: 019482 Start: 1007 End: 2248 |
| Description | pectin methylesterase 2 |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| CE8 | 263 | 349 | 2.5e-27 |
| AVVAQDGSGNYTTVSAAVAAAPTNSKRRYVIYIKAGAYMENVEVGKKHVNLMFVGDGIGKTVIKASRNVVDGSTTFRSATVGEYAHT | |||
| Full Sequence |
|---|
| Protein Sequence Length: 414 Download |
| MPPLPKRPGP LLVLLVVAFA AATAAAAASD AAGATVPFYP SAEAAAAAHC DGTLYPDVCL 60 STLADIPDLH KKPLPDVICA AVNRTEDVVA ATASNCSSYL RERSLTARDR LALNDCLELL 120 STSMDELQAT VADLESPAAT GGGGSASSSS AVGARRVTMD HVMTVLSAAI TNQYTCLDGF 180 AYQNGGRVRR YIEPTLHHVS RMVSNSLAMA KKLPGATPSP PSPAAARHPF MGYGQMVKGF 240 PRWVRPGDRR LLQAPASGIA ADAVVAQDGS GNYTTVSAAV AAAPTNSKRR YVIYIKAGAY 300 MENVEVGKKH VNLMFVGDGI GKTVIKASRN VVDGSTTFRS ATVGEYAHTL AFDYVLNAAL 360 LRSPTLLACL LRAFIHPVLD DVKSVDQIIT SEPFITAKYS NKQFELTSTA GVR* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02201 | PLN02201 | 5.0e-47 | 80 | 342 | 264 | + probable pectinesterase/pectinesterase inhibitor | ||
| PLN02301 | PLN02301 | 3.0e-51 | 50 | 343 | 301 | + pectinesterase/pectinesterase inhibitor | ||
| PLN02484 | PLN02484 | 3.0e-52 | 50 | 342 | 300 | + probable pectinesterase/pectinesterase inhibitor | ||
| PLN02933 | PLN02933 | 1.0e-52 | 72 | 344 | 283 | + Probable pectinesterase/pectinesterase inhibitor | ||
| PLN02313 | PLN02313 | 5.0e-63 | 40 | 344 | 317 | + Pectinesterase/pectinesterase inhibitor | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004857 | enzyme inhibitor activity |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACQ85264.1 | 0 | 46 | 343 | 55 | 334 | pectin methylesterase [Musa acuminata AAA Group] |
| GenBank | EEC70505.1 | 0 | 35 | 343 | 34 | 335 | hypothetical protein OsI_01594 [Oryza sativa Indica Group] |
| GenBank | EEE54425.1 | 0 | 35 | 343 | 34 | 354 | hypothetical protein OsJ_01485 [Oryza sativa Japonica Group] |
| RefSeq | NP_001146685.1 | 0 | 1 | 343 | 1 | 333 | hypothetical protein LOC100280285 [Zea mays] |
| RefSeq | XP_002455538.1 | 0 | 1 | 343 | 1 | 346 | hypothetical protein SORBIDRAFT_03g012830 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1xg2_A | 1e-26 | 259 | 343 | 1 | 85 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 1gq8_A | 6e-26 | 256 | 343 | 2 | 89 | A Chain A, Pectin Methylesterase From Carrot |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
