Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00058658m |
Family | GH17 |
Protein Properties | Length: 401 Molecular Weight: 42723.7 Isoelectric Point: 5.6443 |
Chromosome | Chromosome/Scaffold: 019809 Start: 5709 End: 8113 |
Description | Glycosyl hydrolase superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH17 | 33 | 350 | 0 |
GINYGQIANDLPDPTRVAGLLQSMNVNKVKLYDADPRVLTAFANTGVEFIIAVGNENLQTMAASPAAARQWVATHVQPYIPATRITCVTVGNEVFSSNDT VMMSSLLPAMKAVYAALGDLGLGTQVTVSSAHSVNVLATSFPPSSGAFREDLAEYIQPILDFHGQTGSPFLINAYPFFAYKANPGSVSLPYVLFEPNPGV RDPNTNLSYDNMLYAQIDAVYAAMKAMGHTDVGVRISETGWPSKGDDDETGATVQNAAAYNGNLMQRIAMNQGTPLKPNVPIDVYVFALFNEDMKPGPAS ERNYGLFYPNGSPVYAIN |
Full Sequence |
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Protein Sequence Length: 401 Download |
MGLRHRASSL RLLSLALGLA VLLVSVSAQQ KFGINYGQIA NDLPDPTRVA GLLQSMNVNK 60 VKLYDADPRV LTAFANTGVE FIIAVGNENL QTMAASPAAA RQWVATHVQP YIPATRITCV 120 TVGNEVFSSN DTVMMSSLLP AMKAVYAALG DLGLGTQVTV SSAHSVNVLA TSFPPSSGAF 180 REDLAEYIQP ILDFHGQTGS PFLINAYPFF AYKANPGSVS LPYVLFEPNP GVRDPNTNLS 240 YDNMLYAQID AVYAAMKAMG HTDVGVRISE TGWPSKGDDD ETGATVQNAA AYNGNLMQRI 300 AMNQGTPLKP NVPIDVYVFA LFNEDMKPGP ASERNYGLFY PNGSPVYAIN AGSGSGGGSL 360 NPYYTSMFSS SSKLAVSTTF LTERVILLLL LQAIVILLQS * |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG5309 | COG5309 | 1.0e-5 | 108 | 342 | 237 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
pfam00332 | Glyco_hydro_17 | 3.0e-98 | 33 | 350 | 318 | + Glycosyl hydrolases family 17. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | EEC71847.1 | 0 | 26 | 380 | 25 | 382 | hypothetical protein OsI_04517 [Oryza sativa Indica Group] |
RefSeq | NP_001044874.1 | 0 | 26 | 378 | 25 | 380 | Os01g0860800 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001146374.1 | 0 | 1 | 397 | 1 | 399 | hypothetical protein LOC100279952 [Zea mays] |
RefSeq | NP_001149419.1 | 0 | 1 | 400 | 1 | 402 | glucan endo-1,3-beta-glucosidase 7 [Zea mays] |
RefSeq | XP_002456675.1 | 0 | 1 | 400 | 1 | 403 | hypothetical protein SORBIDRAFT_03g040630 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2cyg_A | 0 | 33 | 349 | 2 | 310 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 1ghs_B | 0 | 33 | 349 | 2 | 304 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
PDB | 1ghs_A | 0 | 33 | 349 | 2 | 304 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
PDB | 3f55_D | 0 | 33 | 350 | 3 | 314 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
PDB | 3f55_C | 0 | 33 | 350 | 3 | 314 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |