Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00058995m |
Family | CBM43 |
Protein Properties | Length: 488 Molecular Weight: 53331.4 Isoelectric Point: 9.1479 |
Chromosome | Chromosome/Scaffold: 019787 Start: 306 End: 3205 |
Description | O-Glycosyl hydrolases family 17 protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 373 | 454 | 3.8e-23 |
WCVFNKDAKDKYKDLPASVNYACSNADCTPLGYGSSCNGLSHDGNISYAFNIYFQTMDQDVRACSFGGLAKITTTNASQGGC | |||
GH17 | 31 | 350 | 0 |
VGVNWGTMMSHPIHPSAVVEMLRANGVDRVKLFDADPWTVAALAGSGVQAMLAAPNDQLESLTRDPRRARDWVRHNVTANLNAGVDVRYVAVGNEPFLKS YNGSFINITFPALKNMQKALNEAGFGQRIKVVVPLNADIYSSPENKPVPSAGSFRKDINDLMVDIVNFLHANNAPFVVNIYPFLSLYQNPNFPLNFSFFD GATKPVYDQGMVYANVFDANFDTLVWSLRKAGVPDMRIIVGEVGWPTDGNKNANVKYAQRFYSGFLKKMAKNVGTPLRPGHMEVYLFALIDENQKSVLPG RFERHWGLFTYDGKPKFSID |
Full Sequence |
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Protein Sequence Length: 488 Download |
MARRPAAVAL AVALLLLLLP APVAAAAAAA VGVNWGTMMS HPIHPSAVVE MLRANGVDRV 60 KLFDADPWTV AALAGSGVQA MLAAPNDQLE SLTRDPRRAR DWVRHNVTAN LNAGVDVRYV 120 AVGNEPFLKS YNGSFINITF PALKNMQKAL NEAGFGQRIK VVVPLNADIY SSPENKPVPS 180 AGSFRKDIND LMVDIVNFLH ANNAPFVVNI YPFLSLYQNP NFPLNFSFFD GATKPVYDQG 240 MVYANVFDAN FDTLVWSLRK AGVPDMRIIV GEVGWPTDGN KNANVKYAQR FYSGFLKKMA 300 KNVGTPLRPG HMEVYLFALI DENQKSVLPG RFERHWGLFT YDGKPKFSID LRGNGKVNYL 360 AEVKGVQYLP SQWCVFNKDA KDKYKDLPAS VNYACSNADC TPLGYGSSCN GLSHDGNISY 420 AFNIYFQTMD QDVRACSFGG LAKITTTNAS QGGCLFPVQI LSVSGRVVPL IFLHLSLVLL 480 VSVFTLL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam07983 | X8 | 1.0e-15 | 372 | 442 | 81 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 1.0e-29 | 372 | 456 | 87 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
pfam00332 | Glyco_hydro_17 | 2.0e-74 | 32 | 350 | 323 | + Glycosyl hydrolases family 17. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | EEC79587.1 | 0 | 29 | 432 | 31 | 432 | hypothetical protein OsI_20766 [Oryza sativa Indica Group] |
GenBank | EEE64491.1 | 0 | 29 | 487 | 31 | 487 | hypothetical protein OsJ_19341 [Oryza sativa Japonica Group] |
RefSeq | NP_001056153.1 | 0 | 29 | 487 | 31 | 487 | Os05g0535100 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001152213.1 | 0 | 34 | 462 | 33 | 460 | glucan endo-1,3-beta-glucosidase 5 [Zea mays] |
RefSeq | XP_002440138.1 | 0 | 34 | 464 | 34 | 463 | hypothetical protein SORBIDRAFT_09g026690 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3ur8_B | 0 | 31 | 354 | 3 | 317 | X Chain X, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean Ascorbate Peroxidase |
PDB | 3ur8_A | 0 | 31 | 354 | 3 | 317 | X Chain X, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean Ascorbate Peroxidase |
PDB | 3ur7_B | 0 | 31 | 354 | 3 | 317 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
PDB | 3ur7_A | 0 | 31 | 354 | 3 | 317 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
PDB | 2cyg_A | 1.4013e-45 | 31 | 351 | 1 | 312 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |