| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00059046m |
| Family | CBM43 |
| Protein Properties | Length: 467 Molecular Weight: 50211.2 Isoelectric Point: 8.5704 |
| Chromosome | Chromosome/Scaffold: 0201174 Start: 584 End: 2245 |
| Description | O-Glycosyl hydrolases family 17 protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| CBM43 | 386 | 467 | 1.5e-25 |
| WCVVSAAASKKRNETAVGNALSYACGQGNGTCDAIQPGKQCYLPNTTVAHASYAFNSYWQQFRKIGATCYFNNLAEQTIEDP | |||
| GH17 | 35 | 359 | 0 |
| LGVNYGRVADDIPSPRRSVELLRAAGAGSVKIYDANPGVLRALAGTRWPVSIMVPNEIIPDIAASPAAAGRWVADNLVPYYPATRVKFLLVGNEILSDYS IVNSTWTRLVPAMENIHLSLRKRGISSVKIGTTLAMDALADGAFPRPPSAAAFRPDIAESVVRPLLHFLNGTNSYYFVDAYPYFVWAGNNLTVSLDYALF QGGRTRYVDPGTGLTYTNMLDEMLDAVAIAMAKLGYGGVKLAVAETGWPNGCDFDQIGGNVHNAAIYNRNLAARMAKNPGTPLRPGAKMPVFVFSLYNED LKGGPGTERHWGLYYANGTAVYEID | |||
| Full Sequence |
|---|
| Protein Sequence Length: 467 Download |
| MAAAPPLRAL LLLLCTAFSV HVAAAHGASA GGHGLGVNYG RVADDIPSPR RSVELLRAAG 60 AGSVKIYDAN PGVLRALAGT RWPVSIMVPN EIIPDIAASP AAAGRWVADN LVPYYPATRV 120 KFLLVGNEIL SDYSIVNSTW TRLVPAMENI HLSLRKRGIS SVKIGTTLAM DALADGAFPR 180 PPSAAAFRPD IAESVVRPLL HFLNGTNSYY FVDAYPYFVW AGNNLTVSLD YALFQGGRTR 240 YVDPGTGLTY TNMLDEMLDA VAIAMAKLGY GGVKLAVAET GWPNGCDFDQ IGGNVHNAAI 300 YNRNLAARMA KNPGTPLRPG AKMPVFVFSL YNEDLKGGPG TERHWGLYYA NGTAVYEIDL 360 TGRRPLWSYP PLPAPENNTP YKGPIWCVVS AAASKKRNET AVGNALSYAC GQGNGTCDAI 420 QPGKQCYLPN TTVAHASYAF NSYWQQFRKI GATCYFNNLA EQTIEDP |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
 | ||||||||
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG5309 | COG5309 | 0.0009 | 271 | 351 | 84 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
| pfam07983 | X8 | 2.0e-17 | 386 | 460 | 80 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
| smart00768 | X8 | 6.0e-30 | 386 | 467 | 82 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
| pfam00332 | Glyco_hydro_17 | 1.0e-80 | 38 | 359 | 323 | + Glycosyl hydrolases family 17. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACN28576.1 | 0 | 147 | 467 | 1 | 321 | unknown [Zea mays] |
| GenBank | EEC84834.1 | 0 | 9 | 467 | 5 | 465 | hypothetical protein OsI_31928 [Oryza sativa Indica Group] |
| RefSeq | NP_001063586.1 | 0 | 10 | 467 | 8 | 468 | Os09g0502200 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001149815.1 | 0 | 19 | 467 | 18 | 465 | glucan endo-1,3-beta-glucosidase A6 [Zea mays] |
| RefSeq | XP_002462618.1 | 0 | 35 | 467 | 37 | 469 | hypothetical protein SORBIDRAFT_02g029080 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2cyg_A | 0 | 35 | 360 | 1 | 312 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 1ghs_B | 0 | 35 | 360 | 1 | 306 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
| PDB | 1ghs_A | 0 | 35 | 360 | 1 | 306 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
| PDB | 1ghr_A | 0 | 35 | 360 | 1 | 306 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
| PDB | 1aq0_B | 0 | 35 | 360 | 1 | 306 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
