Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00059330m |
Family | CE8 |
Protein Properties | Length: 229 Molecular Weight: 25203.4 Isoelectric Point: 6.7455 |
Chromosome | Chromosome/Scaffold: 0153859 Start: 19 End: 1000 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 16 | 214 | 0 |
LRFASGFIAKNISFINVAPIPRPGAVDAQAVAIRISGDQAAFWGCRHYFKECFIQGSIDFIFGDARSLYENCRLISIADPVPSGQRSITGSVTAHGRVSE DDNTGYSFVKCSIGGTGWIWLGRAWRPYSRVVFAYASMSDIIASEGWNDWNDPSRDQTVFYVEYKCTGDGANLADRVPYAQKLSDVQVLPYLSTSFING |
Full Sequence |
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Protein Sequence Length: 229 Download |
MTLPNQRTAH SIALSLRFAS GFIAKNISFI NVAPIPRPGA VDAQAVAIRI SGDQAAFWGC 60 RHYFKECFIQ GSIDFIFGDA RSLYENCRLI SIADPVPSGQ RSITGSVTAH GRVSEDDNTG 120 YSFVKCSIGG TGWIWLGRAW RPYSRVVFAY ASMSDIIASE GWNDWNDPSR DQTVFYVEYK 180 CTGDGANLAD RVPYAQKLSD VQVLPYLSTS FINGEQWLKP YCDSLISA* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02432 | PLN02432 | 6.0e-65 | 18 | 219 | 216 | + putative pectinesterase | ||
PLN02671 | PLN02671 | 7.0e-66 | 22 | 219 | 212 | + pectinesterase | ||
PLN02665 | PLN02665 | 5.0e-80 | 22 | 220 | 214 | + pectinesterase family protein | ||
PLN02682 | PLN02682 | 4.0e-88 | 19 | 220 | 216 | + pectinesterase family protein | ||
PLN02304 | PLN02304 | 3.0e-144 | 18 | 223 | 220 | + probable pectinesterase |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABN08648.1 | 0 | 18 | 219 | 173 | 388 | Pectinesterase [Medicago truncatula] |
GenBank | EEC83093.1 | 0 | 18 | 228 | 170 | 394 | hypothetical protein OsI_28228 [Oryza sativa Indica Group] |
GenBank | EEE68230.1 | 0 | 18 | 228 | 295 | 519 | hypothetical protein OsJ_26414 [Oryza sativa Japonica Group] |
RefSeq | XP_002267842.1 | 0 | 18 | 221 | 179 | 396 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002445213.1 | 0 | 8 | 228 | 166 | 399 | hypothetical protein SORBIDRAFT_07g006050 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 2e-30 | 20 | 219 | 94 | 309 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 5e-22 | 21 | 225 | 91 | 315 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2nt9_B | 0.000000009 | 42 | 212 | 127 | 334 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2nt9_A | 0.000000009 | 42 | 212 | 127 | 334 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2nt6_B | 0.000000009 | 42 | 212 | 127 | 334 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
CN126467 | 169 | 61 | 229 | 0 |
GD049499 | 179 | 8 | 172 | 0 |
GO029435 | 220 | 14 | 219 | 0 |
CV516831 | 222 | 19 | 226 | 0 |
CV516657 | 216 | 25 | 226 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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