| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00059537m |
| Family | GH33 |
| Protein Properties | Length: 408 Molecular Weight: 45833.5 Isoelectric Point: 8.7995 |
| Chromosome | Chromosome/Scaffold: 015271 Start: 911 End: 3244 |
| Description | BNR/Asp-box repeat family protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH33 | 100 | 393 | 2e-24 |
| PARNAPFNSCHASTIVQIDESNFLVAYFGGSMEGAPDVKIWLQRYSGGHWHPPVVADEQFGVPMWNPVLFQLPSRELLLFYKIGQEVQKWSGAMKRSLDG GITWLPREQLPPGILGPIKNKPFLLEDGRLLCGSSVESWNSWGAWLEVTQDAGRTWRKYGPIYLDGQPLGVIQPVPYRTAKGVIRVLLRSFQTIGRICMA DSFDGGVTWSFVRGTQLPNPNSGIDGVKMKDGRVVLAYNTFSRGTLKLAVSLNDGDSWNEMMTLEDTSGMEFSYPAVIQTMDGLIHVTYTYNRT | |||
| Full Sequence |
|---|
| Protein Sequence Length: 408 Download |
| MLTIYGTNKL QLLWNVISCI LLFYAFFNFD SPHKIHLGKK TFDFTISASR LLHEIRSNSR 60 RVQEKVDNEQ RFAEITQNIT NIAANVTSGW SILKEEFTFP ARNAPFNSCH ASTIVQIDES 120 NFLVAYFGGS MEGAPDVKIW LQRYSGGHWH PPVVADEQFG VPMWNPVLFQ LPSRELLLFY 180 KIGQEVQKWS GAMKRSLDGG ITWLPREQLP PGILGPIKNK PFLLEDGRLL CGSSVESWNS 240 WGAWLEVTQD AGRTWRKYGP IYLDGQPLGV IQPVPYRTAK GVIRVLLRSF QTIGRICMAD 300 SFDGGVTWSF VRGTQLPNPN SGIDGVKMKD GRVVLAYNTF SRGTLKLAVS LNDGDSWNEM 360 MTLEDTSGME FSYPAVIQTM DGLIHVTYTY NRTQIKHVVV KPGATVN* |
| Functional Domains Download unfiltered results here | ||||||
|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
| cd00260 | Sialidase | 0.001 | 163 | 357 | 231 | + Sialidases or neuraminidases function to bind and hydrolyze terminal sialic acid residues from various glycoconjugates as well as playing roles in pathogenesis, bacterial nutrition and cellular interactions. They have a six-bladed, beta-propeller fold with the non-viral sialidases containing 2-5 Asp-box motifs (most commonly Ser/Thr-X-Asp-[X]-Gly-X-Thr- Trp/Phe). This CD includes eubacterial, eukaryotic, and viral sialidases. |
| COG4692 | COG4692 | 2.0e-30 | 105 | 403 | 351 | + Predicted neuraminidase (sialidase) [Carbohydrate transport and metabolism] |
| pfam13088 | BNR_2 | 9.0e-92 | 121 | 386 | 281 | + BNR repeat-like domain. This family of proteins contains BNR-like repeats suggesting these proteins may act as sialidases. |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | EEC82140.1 | 0 | 1 | 396 | 1 | 412 | hypothetical protein OsI_26191 [Oryza sativa Indica Group] |
| GenBank | EEC82140.1 | 0 | 116 | 402 | 421 | 681 | hypothetical protein OsI_26191 [Oryza sativa Indica Group] |
| GenBank | EEE67268.1 | 0 | 1 | 396 | 501 | 912 | hypothetical protein OsJ_24447 [Oryza sativa Japonica Group] |
| RefSeq | NP_001059779.1 | 0 | 1 | 406 | 1 | 422 | Os07g0516000 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002460769.1 | 0 | 1 | 407 | 1 | 411 | hypothetical protein SORBIDRAFT_02g034675 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2jkb_A | 0.0006 | 192 | 339 | 449 | 601 | A Chain A, Crystal Structure Of Streptococcus Pneumoniae Nanb In Complex With 2,7-Anhydro-Neu5ac |
| PDB | 4fq4_A | 0.0007 | 192 | 339 | 460 | 612 | A Chain A, Crystal Structure Of Streptococcus Pneumoniae Nanb In Complex With 2,7-Anhydro-Neu5ac |
| PDB | 4fpy_A | 0.0007 | 192 | 339 | 460 | 612 | A Chain A, Crystal Structure Of Streptococcus Pneumoniae Nanb In Complex With 2,7-Anhydro-Neu5ac |
| PDB | 4fpo_B | 0.0007 | 192 | 339 | 460 | 612 | A Chain A, Crystal Structure Of Streptococcus Pneumoniae Nanb In Complex With 2,7-Anhydro-Neu5ac |
| PDB | 4fpl_A | 0.0007 | 192 | 339 | 460 | 612 | A Chain A, Crystal Structure Of Streptococcus Pneumoniae Nanb In Complex With 2,7-Anhydro-Neu5ac |
