| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00060136m |
| Family | GH3 |
| Protein Properties | Length: 477 Molecular Weight: 52279.8 Isoelectric Point: 7.5794 |
| Chromosome | Chromosome/Scaffold: 014851 Start: 5839 End: 9485 |
| Description | Glycosyl hydrolase family protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH3 | 83 | 321 | 0 |
| LASRLGVPILYGTDAVHGHNNVYGATVFPHNVGLGATRDAELARRIGEATALEIRATGIHWTFAPCVAVCRDPRWGRCYESYSEDPEIVRSLTTIVSGLQ GQPPADHPHGYPFLASVRENVLACAKHFVGDGGTDKGLNEGNAICSYEDLEAIHMTPYPDCIAQGVATVMASYSKWNGEPLHSSRYLLTDVLKGKLGFKG FVISDWEGIDRLCEPQKPRGSDYQYCIAQSVNAGMDMIM | |||
| Full Sequence |
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| Protein Sequence Length: 477 Download |
| MAAPLYRDAS APVEARVRDL LARMTLREKA AQMAQIERTV VSPRALTELG AGSVLNAGGS 60 TPRERASPAD WAAMVDCLQR HALASRLGVP ILYGTDAVHG HNNVYGATVF PHNVGLGATR 120 DAELARRIGE ATALEIRATG IHWTFAPCVA VCRDPRWGRC YESYSEDPEI VRSLTTIVSG 180 LQGQPPADHP HGYPFLASVR ENVLACAKHF VGDGGTDKGL NEGNAICSYE DLEAIHMTPY 240 PDCIAQGVAT VMASYSKWNG EPLHSSRYLL TDVLKGKLGF KGFVISDWEG IDRLCEPQKP 300 RGSDYQYCIA QSVNAGMDMI MIPHRFEKFL EDIVFLVEKG EIPMSRIDDA VERILRVKFI 360 SGVFEHPFSD HSLLDIVGCK EHRLLAREAV RKSLVLLKNG KDQKAPFLPL AKNAKRILVS 420 GTHADNIGYQ CGGWTIAWHG DSGKITLDDA VVWYSKIGRR LHSVVTGPKF ELARVS* 480 |
| Functional Domains Download unfiltered results here | ||||||
|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
| pfam01915 | Glyco_hydro_3_C | 6.0e-8 | 394 | 435 | 42 | + Glycosyl hydrolase family 3 C-terminal domain. This domain is involved in catalysis and may be involved in binding beta-glucan. This domain is found associated with pfam00933. |
| PLN03080 | PLN03080 | 4.0e-35 | 8 | 435 | 450 | + Probable beta-xylosidase; Provisional |
| PRK15098 | PRK15098 | 9.0e-62 | 1 | 437 | 455 | + beta-D-glucoside glucohydrolase; Provisional |
| pfam00933 | Glyco_hydro_3 | 2.0e-92 | 25 | 357 | 337 | + Glycosyl hydrolase family 3 N terminal domain. |
| COG1472 | BglX | 4.0e-97 | 24 | 456 | 446 | + Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism] |
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | EEC79317.1 | 0 | 12 | 452 | 13 | 450 | hypothetical protein OsI_20160 [Oryza sativa Indica Group] |
| GenBank | EEE63918.1 | 0 | 12 | 452 | 13 | 450 | hypothetical protein OsJ_18743 [Oryza sativa Japonica Group] |
| RefSeq | NP_001145784.1 | 0 | 2 | 452 | 9 | 459 | hypothetical protein LOC100279291 [Zea mays] |
| RefSeq | NP_190284.1 | 0 | 5 | 447 | 9 | 447 | glycosyl hydrolase family 3 protein [Arabidopsis thaliana] |
| RefSeq | XP_002279757.1 | 0 | 5 | 452 | 116 | 561 | PREDICTED: hypothetical protein [Vitis vinifera] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1x39_A | 0 | 5 | 452 | 4 | 448 | A Chain A, Arabidopsis Thaliana Peroxidase A2 |
| PDB | 1x38_A | 0 | 5 | 452 | 4 | 448 | A Chain A, Arabidopsis Thaliana Peroxidase A2 |
| PDB | 1lq2_A | 0 | 5 | 452 | 4 | 448 | A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase Isoenzyme Exo1 In Complex With Gluco-Phenylimidazole |
| PDB | 1j8v_A | 0 | 5 | 452 | 4 | 448 | A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase Isoenzyme Exo1 In Complex With Gluco-Phenylimidazole |
| PDB | 1iex_A | 0 | 5 | 452 | 4 | 448 | A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase Isoenzyme Exo1 In Complex With Gluco-Phenylimidazole |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| coumarin biosynthesis (via 2-coumarate) | RXN-8036 | EC-3.2.1.21 | β-glucosidase |
| linamarin degradation | RXN-5341 | EC-3.2.1.21 | β-glucosidase |
| linustatin bioactivation | RXN-13602 | EC-3.2.1.21 | β-glucosidase |
| linustatin bioactivation | RXN-5341 | EC-3.2.1.21 | β-glucosidase |
| lotaustralin degradation | RXN-9674 | EC-3.2.1.21 | β-glucosidase |
| neolinustatin bioactivation | RXN-13603 | EC-3.2.1.21 | β-glucosidase |
| neolinustatin bioactivation | RXN-9674 | EC-3.2.1.21 | β-glucosidase |
| taxiphyllin bioactivation | RXN-13600 | EC-3.2.1.21 | β-glucosidase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| GO800387 | 285 | 168 | 452 | 0 |
| DY265467 | 316 | 132 | 447 | 0 |
| HO784016 | 394 | 51 | 444 | 0 |
| DR825529 | 252 | 2 | 253 | 0 |
| HO784016 | 48 | 6 | 53 | 0.001 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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