Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00060446m |
Family | GH17 |
Protein Properties | Length: 344 Molecular Weight: 37465.7 Isoelectric Point: 5.7762 |
Chromosome | Chromosome/Scaffold: 014906 Start: 6025 End: 7134 |
Description | Glycosyl hydrolase superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH17 | 8 | 324 | 0 |
IGINYGQIADNLPSPARVSWLLRSMQVSKVKLYDADPYVLGAFLDTGVEFVVGIGNENVSAMVDPAAARAWIQRHVQPFLPATRITCITVGNEVFKGNDT ELKANLLPAMQSVYQALAALGLQGRVNVTTAHSLDIMGSSFPPSAGAFRADVVPYMQPILSFLSMARSPFLINCYPYFAYKADPGNVPLEYVLFQPNAGV TDTNTRLNYDNMLYAQVDSVYAAIQALGHADIDVKISETGWPSRGDPDEAGATPEYAGTYTGNLLRRIEMKQGTPLRPSVPIDVYVFALFNENLKPGPAS ERNYGLFYPDGTPVYNV |
Full Sequence |
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Protein Sequence Length: 344 Download |
MRAGATPIGI NYGQIADNLP SPARVSWLLR SMQVSKVKLY DADPYVLGAF LDTGVEFVVG 60 IGNENVSAMV DPAAARAWIQ RHVQPFLPAT RITCITVGNE VFKGNDTELK ANLLPAMQSV 120 YQALAALGLQ GRVNVTTAHS LDIMGSSFPP SAGAFRADVV PYMQPILSFL SMARSPFLIN 180 CYPYFAYKAD PGNVPLEYVL FQPNAGVTDT NTRLNYDNML YAQVDSVYAA IQALGHADID 240 VKISETGWPS RGDPDEAGAT PEYAGTYTGN LLRRIEMKQG TPLRPSVPID VYVFALFNEN 300 LKPGPASERN YGLFYPDGTP VYNVGLRGYF PPMDYSRGTR KIN* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG5309 | COG5309 | 4.0e-5 | 35 | 317 | 293 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
pfam00332 | Glyco_hydro_17 | 4.0e-100 | 8 | 324 | 318 | + Glycosyl hydrolases family 17. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAD40655.2 | 0 | 8 | 342 | 42 | 376 | OSJNBa0073L04.8 [Oryza sativa (japonica cultivar-group)] |
EMBL | CAH67163.1 | 0 | 8 | 341 | 42 | 375 | H0717B12.10 [Oryza sativa (indica cultivar-group)] |
GenBank | EAY94033.1 | 0 | 8 | 342 | 3 | 337 | hypothetical protein OsI_15811 [Oryza sativa Indica Group] |
RefSeq | NP_001052739.1 | 0 | 8 | 341 | 42 | 375 | Os04g0412300 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002446413.1 | 0 | 2 | 341 | 39 | 389 | hypothetical protein SORBIDRAFT_06g015590 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2cyg_A | 0 | 8 | 326 | 1 | 312 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3f55_D | 0 | 8 | 326 | 2 | 315 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3f55_C | 0 | 8 | 326 | 2 | 315 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3f55_B | 0 | 8 | 326 | 2 | 315 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3f55_A | 0 | 8 | 326 | 2 | 315 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
HO825834 | 327 | 5 | 330 | 0 |
HO810153 | 327 | 5 | 330 | 0 |
CJ668864 | 246 | 53 | 298 | 0 |
EL694974 | 265 | 36 | 300 | 0 |
GR996037 | 282 | 46 | 327 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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