Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00060635m |
Family | GH100 |
Protein Properties | Length: 604 Molecular Weight: 68030 Isoelectric Point: 6.1611 |
Chromosome | Chromosome/Scaffold: 015058 Start: 5701 End: 9991 |
Description | alkaline/neutral invertase |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH100 | 120 | 580 | 0 |
TSSVEDEAWELLQESMVYYCGSPVGTIAANDPNDSDPVNYDQVFIRDFIPSGIAFLLKGEYEIVRNFILHTLQLQSWEKTMDCHSPGQGLMPASFKVRTI PLDGDEDATEEVLDPDFGEAAIGRVAPVDSGLWWIILLRAYGKCSGDLSVQERIDVQTGMKMILKLCLADGFDMFPTLLVTDGSCMIDRRMGIHGHPLEI QALFYSALLCAREMLTPEDGSADLIRALNNRLIALSFHIREYYWVDMQKLNEIYRYKTEEYSYDAVNKFNIYPDQIPPWLVEWVPPKGGYFIGNLQPAHM DFRFFSLGNLWSIVSSLATTHQSHAILDLIESKWSDLVAEMPLKICYPALENQEWKIITGSDPKNTPWSYHNGGSWPTLLWQLTVACIKMNRPELAAKAI EVAERRIATDKWPEYYDTKRARFIGKQSRLYQTWSIAGFLVAKLLMEKPDAARILWNDEDA |
Full Sequence |
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Protein Sequence Length: 604 Download |
MGIAEVALHT MPGAFAAHSP ASNLPLVADA RRRKRNAYSL PNVRALQGLL KFPRLRSVRR 60 QCQQIDDLAR VTEGYGNWVK DAMNNASQVL DDVGMADQAV GGNGGLNGNA VKPAPQRQKT 120 SSVEDEAWEL LQESMVYYCG SPVGTIAAND PNDSDPVNYD QVFIRDFIPS GIAFLLKGEY 180 EIVRNFILHT LQLQSWEKTM DCHSPGQGLM PASFKVRTIP LDGDEDATEE VLDPDFGEAA 240 IGRVAPVDSG LWWIILLRAY GKCSGDLSVQ ERIDVQTGMK MILKLCLADG FDMFPTLLVT 300 DGSCMIDRRM GIHGHPLEIQ ALFYSALLCA REMLTPEDGS ADLIRALNNR LIALSFHIRE 360 YYWVDMQKLN EIYRYKTEEY SYDAVNKFNI YPDQIPPWLV EWVPPKGGYF IGNLQPAHMD 420 FRFFSLGNLW SIVSSLATTH QSHAILDLIE SKWSDLVAEM PLKICYPALE NQEWKIITGS 480 DPKNTPWSYH NGGSWPTLLW QLTVACIKMN RPELAAKAIE VAERRIATDK WPEYYDTKRA 540 RFIGKQSRLY QTWSIAGFLV AKLLMEKPDA ARILWNDEDA EILNALSTNR KRGKKVLKKT 600 YIV* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3408 | GDB1 | 0.005 | 163 | 347 | 198 | + Glycogen debranching enzyme [Carbohydrate transport and metabolism] | ||
PLN02703 | PLN02703 | 0 | 116 | 603 | 494 | + beta-fructofuranosidase | ||
pfam12899 | Glyco_hydro_100 | 0 | 126 | 568 | 443 | + Alkaline and neutral invertase. This is a family of bacterial and plant alkaline and neutral invertases, EC:3.2.1.26, previously known as Invertase_neut pfam04853. | ||
PLN03005 | PLN03005 | 0 | 126 | 582 | 457 | + beta-fructofuranosidase | ||
PLN02973 | PLN02973 | 0 | 126 | 582 | 457 | + beta-fructofuranosidase |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACF84899.1 | 0 | 1 | 603 | 1 | 601 | unknown [Zea mays] |
GenBank | EAY86114.1 | 0 | 1 | 603 | 1 | 624 | hypothetical protein OsI_07486 [Oryza sativa Indica Group] |
RefSeq | NP_001047012.1 | 0 | 1 | 603 | 1 | 606 | Os02g0529400 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001142296.1 | 0 | 1 | 603 | 1 | 601 | hypothetical protein LOC100274465 [Zea mays] |
RefSeq | XP_002452195.1 | 0 | 1 | 603 | 1 | 603 | hypothetical protein SORBIDRAFT_04g021550 [Sorghum bicolor] |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
HO811217 | 496 | 116 | 604 | 0 |
HO779905 | 406 | 202 | 604 | 0 |
GO872629 | 342 | 117 | 458 | 0 |
CX103184 | 333 | 272 | 604 | 0 |
GO855285 | 323 | 112 | 434 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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