Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00060764m |
Family | CBM43 |
Protein Properties | Length: 490 Molecular Weight: 53076.3 Isoelectric Point: 4.9657 |
Chromosome | Chromosome/Scaffold: 015295 Start: 4791 End: 8334 |
Description | O-Glycosyl hydrolases family 17 protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 369 | 450 | 4.9e-25 |
WCVLKPSVPLNDPKIADNVGYACSMADCTSLGYKTSCGMLDESGNISYAFNNYYQKNDQDDVACGFQNLATTTGQDPSTGTC | |||
GH17 | 30 | 347 | 0 |
IGANWGTQTSHPLPPDTVVRMLKDNGFQKVKLFDAEEGTMNALKKSGLEVMVGIPNDMLLTMASNIKSAEKWVYTNVSSYLNDGVNIRYVAVGNEPFLET YNGSFLQTTYPAIRNIQSALIKAGLGNQVRVTCPLNADVYASPTTKPSDGDFRTDIHDLMIAIVKLLSDNGGAFTVNIYPFISLYIDPNFPVDYAFFEGA SSPIVDGSITYTNMFDANHDTLIWALKKNGFGNLPVIVGEIGWPTDGDRNANAQMAQRFNQGFMTHIASGRGTPMRPGPVDAYLFSLIDEDEKSIQPGNF ERHWGIFTYDGWPKYQLN |
Full Sequence |
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Protein Sequence Length: 490 Download |
MGSGSGHGAA AVAVALVSWL CFASAGVGAI GANWGTQTSH PLPPDTVVRM LKDNGFQKVK 60 LFDAEEGTMN ALKKSGLEVM VGIPNDMLLT MASNIKSAEK WVYTNVSSYL NDGVNIRYVA 120 VGNEPFLETY NGSFLQTTYP AIRNIQSALI KAGLGNQVRV TCPLNADVYA SPTTKPSDGD 180 FRTDIHDLMI AIVKLLSDNG GAFTVNIYPF ISLYIDPNFP VDYAFFEGAS SPIVDGSITY 240 TNMFDANHDT LIWALKKNGF GNLPVIVGEI GWPTDGDRNA NAQMAQRFNQ GFMTHIASGR 300 GTPMRPGPVD AYLFSLIDED EKSIQPGNFE RHWGIFTYDG WPKYQLNLGT ANSGGLVRAK 360 GVKYLEKKWC VLKPSVPLND PKIADNVGYA CSMADCTSLG YKTSCGMLDE SGNISYAFNN 420 YYQKNDQDDV ACGFQNLATT TGQDPSTGTC RFGIMIEVDS AFSLGLQRLG SNFFLMLLLV 480 LLQLCLSFS* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG5309 | COG5309 | 3.0e-6 | 261 | 339 | 79 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
pfam07983 | X8 | 3.0e-16 | 368 | 439 | 79 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 2.0e-28 | 368 | 452 | 87 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
pfam00332 | Glyco_hydro_17 | 2.0e-71 | 30 | 347 | 320 | + Glycosyl hydrolases family 17. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | EAY84415.1 | 0 | 29 | 472 | 34 | 475 | hypothetical protein OsI_05789 [Oryza sativa Indica Group] |
RefSeq | NP_001045844.1 | 0 | 7 | 472 | 8 | 472 | Os02g0139300 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001151032.1 | 0 | 33 | 467 | 36 | 471 | glucan endo-1,3-beta-glucosidase 6 [Zea mays] |
RefSeq | NP_200617.2 | 0 | 29 | 486 | 21 | 476 | glycosyl hydrolase family 17 protein [Arabidopsis thaliana] |
RefSeq | XP_002530371.1 | 0 | 8 | 457 | 2 | 451 | Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2cyg_A | 0 | 30 | 348 | 1 | 312 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3f55_D | 0 | 30 | 348 | 2 | 315 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3f55_C | 0 | 30 | 348 | 2 | 315 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3f55_B | 0 | 30 | 348 | 2 | 315 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3f55_A | 0 | 30 | 348 | 2 | 315 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |