Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00060782m |
Family | AA1 |
Protein Properties | Length: 544 Molecular Weight: 58808.8 Isoelectric Point: 8.7236 |
Chromosome | Chromosome/Scaffold: 0155607 Start: 190 End: 2514 |
Description | SKU5 similar 17 |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
AA1 | 47 | 501 | 0 |
TQQGILINGQFPGPPIDCVTNDNLIVTVVNRLDEPFLLTWNGIKQRKNSWQDGVAGTNCPIPPGANYTYKLQAKDQIGSFTYFPSLALHRAAGGFGALNV YQRPKIPVPYPPPAGDFTLLVGDWYAAGHRQLRRTLDAGAPLPPPDGLLINGARSPPAFVGARGGTYLFRVSNVGLKASVNVRIQGHRLRLAEVEGTHPV QNVYDSLDVHAGQSLAFLVALDQPPLDYAVVVSTRFAAADLTAVATLHYAGAAARAPGPLPAAPPPGQYGWSVNQARSFRWNLTASAARPNPQGSFHYGA IPTSRTLVLASSSPAIAGRRRCAVNGVSFVVPDTPLKLADNYNIANVIEWDSLPARPGAAGAPPRAGTPVVRLNLHEFVEIVFQNTENELQSWHLDGYDF WVVGYGDGQWTEMQRQTYNLVDAQARHTVQVYPNGWSAILVSLDNQGMWNLRSAI |
Full Sequence |
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Protein Sequence Length: 544 Download |
MPAAMAAAVL LVLLLAVAAP PLAGADDPYR YFTWTVTYGP ISPLGTTQQG ILINGQFPGP 60 PIDCVTNDNL IVTVVNRLDE PFLLTWNGIK QRKNSWQDGV AGTNCPIPPG ANYTYKLQAK 120 DQIGSFTYFP SLALHRAAGG FGALNVYQRP KIPVPYPPPA GDFTLLVGDW YAAGHRQLRR 180 TLDAGAPLPP PDGLLINGAR SPPAFVGARG GTYLFRVSNV GLKASVNVRI QGHRLRLAEV 240 EGTHPVQNVY DSLDVHAGQS LAFLVALDQP PLDYAVVVST RFAAADLTAV ATLHYAGAAA 300 RAPGPLPAAP PPGQYGWSVN QARSFRWNLT ASAARPNPQG SFHYGAIPTS RTLVLASSSP 360 AIAGRRRCAV NGVSFVVPDT PLKLADNYNI ANVIEWDSLP ARPGAAGAPP RAGTPVVRLN 420 LHEFVEIVFQ NTENELQSWH LDGYDFWVVG YGDGQWTEMQ RQTYNLVDAQ ARHTVQVYPN 480 GWSAILVSLD NQGMWNLRSA IWDRQYLGQQ LYLRVWTPQQ SFSNEYSIPT NAILCGRAAG 540 LPH* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02168 | PLN02168 | 1.0e-170 | 28 | 537 | 522 | + copper ion binding / pectinesterase | ||
PLN02835 | PLN02835 | 0 | 25 | 540 | 516 | + oxidoreductase | ||
PLN02354 | PLN02354 | 0 | 25 | 542 | 525 | + copper ion binding / oxidoreductase | ||
PLN02792 | PLN02792 | 0 | 25 | 539 | 518 | + oxidoreductase | ||
PLN02991 | PLN02991 | 0 | 25 | 540 | 516 | + oxidoreductase |
Gene Ontology | |
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GO Term | Description |
GO:0005507 | copper ion binding |
GO:0016491 | oxidoreductase activity |
GO:0055114 | oxidation-reduction process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACN27681.1 | 0 | 26 | 543 | 24 | 547 | unknown [Zea mays] |
GenBank | ACR38095.1 | 0 | 26 | 543 | 24 | 553 | unknown [Zea mays] |
RefSeq | NP_001058771.1 | 0 | 26 | 543 | 26 | 545 | Os07g0119400 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002270831.1 | 0 | 5 | 540 | 2 | 533 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002522337.1 | 0 | 25 | 540 | 25 | 536 | multicopper oxidase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1asq_B | 0 | 30 | 539 | 4 | 542 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1asq_A | 0 | 30 | 539 | 4 | 542 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1asp_B | 0 | 30 | 539 | 4 | 542 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1asp_A | 0 | 30 | 539 | 4 | 542 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1aso_B | 0 | 30 | 539 | 4 | 542 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |