CAZyme Information

Basic Information
SpeciesPanicum virgatum
Cazyme IDPavirv00060809m
FamilyGH16
Protein PropertiesLength: 277 Molecular Weight: 31037.9 Isoelectric Point: 8.3481
ChromosomeChromosome/Scaffold: 014828 Start: 3078 End: 4201
Descriptionxyloglucan endotransglucosylase/hydrolase 12
View CDS
External Links
CAZyDB
Signature Domain  Download full data set without filtering
FamilyStartEndEvalue
GH16322031.4e-23
  GTVRMGSDASGQQVVMLNLDRSSGAAGLNSKQQFLYGEFSFEMKLIRGNSAGTVSCFYLSSGTDDWRDEIDTELLGNSSCQPVVLNTNVWANGDGKKEHQ
  FDLWFDPSADHHTYTIIWNPSNILFKVDNVFIRSFKRYADLPYPSSKPMTLHATLWDGSYWATEKGKVPIDW
Full Sequence
Protein Sequence     Length: 277     Download
MARRSLALLA AALAILQVAS ARSWLRQFTT DGTVRMGSDA SGQQVVMLNL DRSSGAAGLN    60
SKQQFLYGEF SFEMKLIRGN SAGTVSCFYL SSGTDDWRDE IDTELLGNSS CQPVVLNTNV    120
WANGDGKKEH QFDLWFDPSA DHHTYTIIWN PSNILFKVDN VFIRSFKRYA DLPYPSSKPM    180
TLHATLWDGS YWATEKGKVP IDWNNAPFVV SYRSFYASAC VSGGACHAGR DGWMRKQLSR    240
AELGTVKWAE RNYMRYNYCQ DGWRFPQGLP AECSRS* 
Functional Domains Download unfiltered results here
Cdd IDDomainE-ValueStartEndLengthDomain Description
cd02183GH16_fungal_CRH1_transglycosylase1.0e-1429217203+
pfam06955XET_C3.0e-1522627351+
pfam00722Glyco_hydro_161.0e-5542203163+
PLN03161PLN031613.0e-6648275240+
cd02176GH16_XET3.0e-10941273243+
Gene Ontology
GO TermDescription
GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0005618cell wall
GO:0005975carbohydrate metabolic process
GO:0006073cellular glucan metabolic process
GO:0016762xyloglucan:xyloglucosyl transferase activity
Annotations - NR Download unfiltered results here
SourceHit IDE-ValueQuery StartQuery EndHit StartHit EndDescription
GenBankACG38167.101727519280xyloglucan endotransglycosylase/hydrolase protein 8 precursor [Zea mays]
GenBankACN31920.102327526280unknown [Zea mays]
RefSeqNP_001105166.102327626280xyloglucan endo-transglycosylase/hydrolase [Zea mays]
RefSeqXP_002446422.102327627280hypothetical protein SORBIDRAFT_06g015880 [Sorghum bicolor]
RefSeqXP_002446425.1012751276hypothetical protein SORBIDRAFT_06g015930 [Sorghum bicolor]
Annotations - PDB Download unfiltered results here
SourceHit IDE-ValueQuery StartQuery EndHit StartHit EndDescription
PDB1un1_B072754274A Chain A, The Crystal Structure Of Rice (Oryza Sativa L.) Os4bglu12
PDB1un1_A072754274A Chain A, The Crystal Structure Of Rice (Oryza Sativa L.) Os4bglu12
PDB1umz_B072754274A Chain A, Xyloglucan Endotransglycosylase In Complex With The Xyloglucan Nonasaccharide Xllg.
PDB1umz_A072754274A Chain A, Xyloglucan Endotransglycosylase In Complex With The Xyloglucan Nonasaccharide Xllg.
PDB2uwb_B05027344267A Chain A, Crystal Structure Of The Nasturtium Seedling Mutant Xyloglucanase Isoform Nxg1-Delta-Yniig
Signal Peptide
Cleavage Site
21
Hydropathy
EST Download unfiltered results here
HitLengthStartEndEValue
FL945578247242700
DV508848255232750
EE287470255232750
FL758275235232560
DT943397248232680
Orthologous Group
SpeciesID
Brachypodium distachyonBradi1g09690.1Bradi1g09700.1Bradi3g18590.1Bradi3g18600.1Bradi5g20718.1
Oryza sativaLOC_Os08g13920.1
Panicum virgatumPavirv00014997mPavirv00011489mPavirv00022766mPavirv00032512mPavirv00011651m
Pavirv00065073mPavirv00039266mPavirv00018963mPavirv00059833m
Setaria italicaSi014242mSi014194mSi014232mSi014215mSi014233m
Sorghum bicolorSb06g015930.1Sb06g015880.1Sb06g015940.1Sb07g009410.1
Sequence Alignments  (This image is cropped. Click for full image.)
Phylogeny