Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00060860m |
Family | CE8 |
Protein Properties | Length: 386 Molecular Weight: 42174.3 Isoelectric Point: 7.0209 |
Chromosome | Chromosome/Scaffold: 0155512 Start: 807 End: 2406 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 83 | 367 | 0 |
DGCYKTISESIANIPDGSTKRYILQLKGGTVFREKVFLPKNKPFVTLMSDPNNPATIVWNDTATTPGRDGKLLGVDGSSTVSIESDYFIAYGIIFKNDAP LPKKGENKGEATALRVLGTKITLYNCTIDGGQGALYDQSGLHYFKACIIRGTVDLIFGSAKSFYEDNNIISVNKETLPMAPLQQQQRNNPIKAAPGEVGL SFKTCTIEGEGEQIYLGRLGMACVYLYTKIDKKLEPVISDGGNVQTVNRTGMIYYADFKSYGPGLDKALRSELSYAEARPYLGTY |
Full Sequence |
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Protein Sequence Length: 386 Download |
MIASIMVKNK QSLLLSLLLV LVELVLLPAP SCQEMNFDFW VRKQTSNASK DAGCAKKDVA 60 LSSADATMVR NSIDPSTQLN PEDGCYKTIS ESIANIPDGS TKRYILQLKG GTVFREKVFL 120 PKNKPFVTLM SDPNNPATIV WNDTATTPGR DGKLLGVDGS STVSIESDYF IAYGIIFKND 180 APLPKKGENK GEATALRVLG TKITLYNCTI DGGQGALYDQ SGLHYFKACI IRGTVDLIFG 240 SAKSFYEDNN IISVNKETLP MAPLQQQQRN NPIKAAPGEV GLSFKTCTIE GEGEQIYLGR 300 LGMACVYLYT KIDKKLEPVI SDGGNVQTVN RTGMIYYADF KSYGPGLDKA LRSELSYAEA 360 RPYLGTYYIS GDTWIPFLPP AETWL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02304 | PLN02304 | 7.0e-45 | 83 | 377 | 311 | + probable pectinesterase | ||
PLN02671 | PLN02671 | 2.0e-49 | 88 | 375 | 297 | + pectinesterase | ||
PLN02634 | PLN02634 | 5.0e-50 | 84 | 375 | 303 | + probable pectinesterase | ||
PLN02682 | PLN02682 | 2.0e-57 | 71 | 376 | 317 | + pectinesterase family protein | ||
PLN02665 | PLN02665 | 1.0e-64 | 84 | 380 | 306 | + pectinesterase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABA95297.2 | 0 | 35 | 380 | 81 | 426 | Pectinesterase family protein, expressed [Oryza sativa (japonica cultivar-group)] |
GenBank | ABA95298.2 | 0 | 35 | 380 | 81 | 426 | Pectinesterase family protein, expressed [Oryza sativa (japonica cultivar-group)] |
GenBank | EAZ19254.1 | 0 | 35 | 380 | 81 | 426 | hypothetical protein OsJ_34791 [Oryza sativa Japonica Group] |
RefSeq | NP_001068465.1 | 0 | 35 | 380 | 1 | 346 | Os11g0683800 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001131452.1 | 0 | 28 | 385 | 34 | 402 | hypothetical protein LOC100192787 [Zea mays] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 4e-20 | 84 | 272 | 17 | 193 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 6e-18 | 84 | 375 | 13 | 304 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2nt9_B | 0.000000000001 | 85 | 379 | 17 | 342 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2nt9_A | 0.000000000001 | 85 | 379 | 17 | 342 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2nt6_B | 0.000000000001 | 85 | 379 | 17 | 342 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |