Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00060976m |
Family | AA7 |
Protein Properties | Length: 547 Molecular Weight: 58942 Isoelectric Point: 7.9697 |
Chromosome | Chromosome/Scaffold: 001081 Start: 13479 End: 15119 |
Description | FAD-binding Berberine family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
AA7 | 63 | 296 | 0 |
PRTPRPALLLTPATVAEARACVACCRRHGLTVRARSGGHYYEGLSYRSVPPRAAATGARRPFAVVDVAALRDVRVDAARREARVGPGATLGELYYAAARE SGGALGFPAGICPTVCVGGHLSGGGFGPMMRRHGLAADNVVGAEVVDAEGRLLDRAAMGEGLFWALRGGGGGSFGVVVSWTVRLVPVPRVVSAFTVRRRL VDRRRTQSALRLLAKWQRVAHALPDDLFVKVAME |
Full Sequence |
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Protein Sequence Length: 547 Download |
SPCSPLEQEH NAAGATLRES FLLCVARVSP ATADPSRIVH APSEPSYPSL LNATIQNLRF 60 ASPRTPRPAL LLTPATVAEA RACVACCRRH GLTVRARSGG HYYEGLSYRS VPPRAAATGA 120 RRPFAVVDVA ALRDVRVDAA RREARVGPGA TLGELYYAAA RESGGALGFP AGICPTVCVG 180 GHLSGGGFGP MMRRHGLAAD NVVGAEVVDA EGRLLDRAAM GEGLFWALRG GGGGSFGVVV 240 SWTVRLVPVP RVVSAFTVRR RLVDRRRTQS ALRLLAKWQR VAHALPDDLF VKVAMEPELD 300 AAGERHPLVV FKSLFLNNCN GMVAAMSAHL PELGVTPGDC RDMSWIRSML YFYGYTDGEP 360 AAEVLLDRSL QPKQYYKVKL DYLTSPMPAA GLAELLDRIV EDGGGSIDID PQGGAMGATP 420 ESATPYAHRR GYLYNVQYFV KWGGGAEEEE GRHLGWVRGV HGFMAAYASS GPRAAYVNFR 480 ELDLGQNVEG ETSYEAARGW GEMYFRGNFR RLAMVKAEVD PEQVFWSEQS IPPLVAADVG 540 GERQSE* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG0277 | GlcD | 2.0e-9 | 147 | 534 | 405 | + FAD/FMN-containing dehydrogenases [Energy production and conversion] | ||
pfam08031 | BBE | 8.0e-15 | 475 | 532 | 58 | + Berberine and berberine like. This domain is found in the berberine bridge and berberine bridge- like enzymes which are involved in the biosynthesis of numerous isoquinoline alkaloids. They catalyze the transformation of the N-methyl group of (S)-reticuline into the C-8 berberine bridge carbon of (S)-scoulerine. | ||
pfam01565 | FAD_binding_4 | 2.0e-15 | 90 | 216 | 127 | + FAD binding domain. This family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar to oxygen oxidoreductase. One of the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyzes the oxidation of a wide variety of substrates, ranging form aromatic amines to 4-alkylphenols. Other members of this family include D-lactate dehydrogenase, this enzyme catalyzes the conversion of D-lactate to pyruvate using FAD as a co-factor; mitomycin radical oxidase, this enzyme oxidises the reduced form of mitomycins and is involved in mitomycin resistance. This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine reductase enzyme EC:1.1.1.158. This enzyme is involved in the biosynthesis of peptidoglycan. |
Gene Ontology | |
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GO Term | Description |
GO:0008762 | UDP-N-acetylmuramate dehydrogenase activity |
GO:0016491 | oxidoreductase activity |
GO:0050660 | flavin adenine dinucleotide binding |
GO:0055114 | oxidation-reduction process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACL54298.1 | 0 | 3 | 538 | 28 | 481 | unknown [Zea mays] |
GenBank | ACN34780.1 | 0 | 3 | 538 | 28 | 555 | unknown [Zea mays] |
GenBank | EAY85134.1 | 0 | 1 | 537 | 22 | 556 | hypothetical protein OsI_06489 [Oryza sativa Indica Group] |
RefSeq | NP_001046387.1 | 0 | 1 | 533 | 23 | 553 | Os02g0235900 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002451843.1 | 0 | 2 | 526 | 23 | 548 | hypothetical protein SORBIDRAFT_04g008542 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 4dns_B | 0 | 17 | 535 | 9 | 497 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
PDB | 4dns_A | 0 | 17 | 535 | 9 | 497 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
PDB | 3tsj_B | 0 | 18 | 535 | 8 | 497 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
PDB | 3tsj_A | 0 | 18 | 535 | 8 | 497 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
PDB | 3tsh_A | 0 | 18 | 535 | 8 | 497 | A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With Glucose Dehydrogenase Activity |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
cannabinoid biosynthesis | RXN-7854 | EC-1.21.3 | tetrahydrocannabinolic acid synthase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DV508716 | 339 | 149 | 484 | 0 |
DR829965 | 322 | 202 | 520 | 0 |
DR822719 | 319 | 190 | 505 | 0 |
DV514342 | 315 | 219 | 530 | 0 |
EC904710 | 300 | 242 | 538 | 0 |
Orthologous Group | |||||
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Species | ID | ||||
Brachypodium distachyon | Bradi3g35067.1 | ||||
Oryza sativa | LOC_Os02g14090.1 |
Sequence Alignments (This image is cropped. Click for full image.) |
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