| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00061161m |
| Family | GH29 |
| Protein Properties | Length: 513 Molecular Weight: 56575 Isoelectric Point: 5.1365 |
| Chromosome | Chromosome/Scaffold: 001920 Start: 16075 End: 19549 |
| Description | alpha-L-fucosidase 1 |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH29 | 38 | 336 | 0 |
| SYAQLRWQLSEMALFLHFGPNTFTDSEWGSGHADPSVFAPSALDAGQWARVAARGGFGRLVLTAKHHDGFCLWPSALTNYSVAASPWRAGAGDVVAELAA ATRAEGIGMGLYLSPWDRHEPVYGDTIAYNEHYMGQMTELLTRYGDVEEVWLDGAKGDAKKMNYMFNAWFALIHQLQQRVVIFSDAGPDTRWVGDEAGVA GYTCWSPFNKSSVTIGHTIDEYQRSGDPFGQDWVPAECDVSIRPGWFWHASEKPKNATSLLDIYYKSVGRNCLLILNVPPNSSGLISDEDMQVLQEFTE | |||
| Full Sequence |
|---|
| Protein Sequence Length: 513 Download |
| MAALLPVLLA HLLLLCAHGA TASAAATPPP LPILPVPSYA QLRWQLSEMA LFLHFGPNTF 60 TDSEWGSGHA DPSVFAPSAL DAGQWARVAA RGGFGRLVLT AKHHDGFCLW PSALTNYSVA 120 ASPWRAGAGD VVAELAAATR AEGIGMGLYL SPWDRHEPVY GDTIAYNEHY MGQMTELLTR 180 YGDVEEVWLD GAKGDAKKMN YMFNAWFALI HQLQQRVVIF SDAGPDTRWV GDEAGVAGYT 240 CWSPFNKSSV TIGHTIDEYQ RSGDPFGQDW VPAECDVSIR PGWFWHASEK PKNATSLLDI 300 YYKSVGRNCL LILNVPPNSS GLISDEDMQV LQEFTEIRHK IFSQNFAANA TVTANSVRGG 360 QDNLQFAPSN VLENSIYSYW APQEGQSSWE MFFDLGKSTS FNVLQLQEPI QLGQRVIKFH 420 VDILIDELWQ TIVAATTIGY KRLLKFPVTE SQYLKLCIIS ARADPLISFF GVFMDSFSDS 480 YNLESHYKRT NSSEVIMLTT GDAAGNRSTA TM* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam01120 | Alpha_L_fucos | 7.0e-31 | 51 | 336 | 318 | + Alpha-L-fucosidase. | ||
| smart00812 | Alpha_L_fucos | 1.0e-31 | 75 | 336 | 284 | + Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis. | ||
| COG3669 | COG3669 | 1.0e-65 | 41 | 473 | 444 | + Alpha-L-fucosidase [Carbohydrate transport and metabolism] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004560 | alpha-L-fucosidase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACG47369.1 | 0 | 16 | 512 | 15 | 513 | alpha-L-fucosidase 1 precursor [Zea mays] |
| EMBL | CAH68057.1 | 0 | 17 | 512 | 20 | 517 | B0103C08-B0602B01.14 [Oryza sativa (indica cultivar-group)] |
| RefSeq | NP_001053546.1 | 0 | 17 | 512 | 20 | 517 | Os04g0560400 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001131532.1 | 0 | 16 | 512 | 15 | 513 | hypothetical protein LOC100192871 [Zea mays] |
| RefSeq | XP_002448322.1 | 0 | 18 | 512 | 17 | 513 | hypothetical protein SORBIDRAFT_06g025200 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3ues_B | 0 | 37 | 468 | 19 | 471 | A Chain A, Crystal Structure Of Alpha-1,34-Fucosidase From Bifidobacterium Longum Subsp. Infantis Complexed With Deoxyfuconojirimycin |
| PDB | 3ues_A | 0 | 37 | 468 | 19 | 471 | A Chain A, Crystal Structure Of Alpha-1,34-Fucosidase From Bifidobacterium Longum Subsp. Infantis Complexed With Deoxyfuconojirimycin |
| PDB | 3mo4_B | 0 | 37 | 468 | 21 | 473 | A Chain A, The Crystal Structure Of An Alpha-(1-3,4)-Fucosidase From Bifidobacterium Longum Subsp. Infantis Atcc 15697 |
| PDB | 3mo4_A | 0 | 37 | 468 | 21 | 473 | A Chain A, The Crystal Structure Of An Alpha-(1-3,4)-Fucosidase From Bifidobacterium Longum Subsp. Infantis Atcc 15697 |
| PDB | 3uet_B | 0 | 37 | 468 | 19 | 471 | A Chain A, Crystal Structure Of Alpha-1,34-Fucosidase From Bifidobacterium Longum Subsp. Infantis D172aE217A MUTANT COMPLEXED WITH LACTO-N- Fucopentaose Ii |
