Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00061179m |
Family | AA1 |
Protein Properties | Length: 553 Molecular Weight: 60966.1 Isoelectric Point: 8.2776 |
Chromosome | Chromosome/Scaffold: 001698 Start: 21806 End: 23933 |
Description | SKU5 similar 18 |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
AA1 | 50 | 503 | 0 |
RVITIDGRLPGPLLNLTTNDVAHINVVNTLDEPFLLTWNGLQMRRNSWNDGVAGTNCAIPPGENWTYVFQAKDEVGSFFYRPSLGLHAAAGGHGPIRVNS RPVIAVPFAQPDSEFDVLIGDWYNMDVKEMRGYLDRGRDLPSPDGILINGLGPYAADFTFQPGRTYRLRVSNVGTRTSLSFRIQGHKLLLVEAEGTYTLQ KHYASLDVHPGQSLSVLVTADQPPKPSYYMVVSSLFVEPELFGVANVLYAGSGGPRPPGAAPLEDLSSHNGYGRSMEQARTVRMNLTCGAARPNPQGSFR YGLINVSRTLLLRNDEAEIGGRRRCTVNGVSFAGAATPLKLADHFDVAGVFTVVSGRPERRRQPSLGTAVIDARYRDFVQIVFENRLPSLQTWHLDGYSF FVAGMGWGKWSPDARSTYNLVDAIYRSTVQVYPSAWTAVLVSLDNEGMWNLRSQ |
Full Sequence |
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Protein Sequence Length: 553 Download |
MDAERLLAVI TTLVLLGSSK HYTVDAENRH VFLDWEVSYD VRSPLGVARR VITIDGRLPG 60 PLLNLTTNDV AHINVVNTLD EPFLLTWNGL QMRRNSWNDG VAGTNCAIPP GENWTYVFQA 120 KDEVGSFFYR PSLGLHAAAG GHGPIRVNSR PVIAVPFAQP DSEFDVLIGD WYNMDVKEMR 180 GYLDRGRDLP SPDGILINGL GPYAADFTFQ PGRTYRLRVS NVGTRTSLSF RIQGHKLLLV 240 EAEGTYTLQK HYASLDVHPG QSLSVLVTAD QPPKPSYYMV VSSLFVEPEL FGVANVLYAG 300 SGGPRPPGAA PLEDLSSHNG YGRSMEQART VRMNLTCGAA RPNPQGSFRY GLINVSRTLL 360 LRNDEAEIGG RRRCTVNGVS FAGAATPLKL ADHFDVAGVF TVVSGRPERR RQPSLGTAVI 420 DARYRDFVQI VFENRLPSLQ TWHLDGYSFF VAGMGWGKWS PDARSTYNLV DAIYRSTVQV 480 YPSAWTAVLV SLDNEGMWNL RSQSLDRRYL GQEIYMRVSQ GSSEAPDPRD ELPMPPNTLL 540 CGKAKSSKIG RA* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02991 | PLN02991 | 2.0e-180 | 8 | 547 | 545 | + oxidoreductase | ||
PLN02792 | PLN02792 | 1.0e-180 | 14 | 546 | 537 | + oxidoreductase | ||
PLN02168 | PLN02168 | 0 | 6 | 543 | 549 | + copper ion binding / pectinesterase | ||
PLN02354 | PLN02354 | 0 | 1 | 545 | 554 | + copper ion binding / oxidoreductase | ||
PLN02835 | PLN02835 | 0 | 6 | 551 | 547 | + oxidoreductase |
Gene Ontology | |
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GO Term | Description |
GO:0005507 | copper ion binding |
GO:0016491 | oxidoreductase activity |
GO:0055114 | oxidation-reduction process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACN40384.1 | 0 | 31 | 542 | 27 | 549 | unknown [Picea sitchensis] |
RefSeq | NP_177707.1 | 0 | 35 | 545 | 31 | 545 | sks18 (SKU5 Similar 18); copper ion binding / pectinesterase [Arabidopsis thaliana] |
RefSeq | XP_001777221.1 | 0 | 7 | 544 | 5 | 537 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_002282214.1 | 0 | 6 | 548 | 11 | 538 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002300700.1 | 0 | 24 | 543 | 15 | 537 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1asq_B | 0 | 35 | 549 | 8 | 546 | A Chain A, Amino Terminal 9kda Domain Of Vaccinia Virus Dna Topoisomerase I Residues 1-77, Experimental Electron Density For Residues 1-77 |
PDB | 1asq_A | 0 | 35 | 549 | 8 | 546 | A Chain A, Amino Terminal 9kda Domain Of Vaccinia Virus Dna Topoisomerase I Residues 1-77, Experimental Electron Density For Residues 1-77 |
PDB | 1asp_B | 0 | 35 | 549 | 8 | 546 | A Chain A, Amino Terminal 9kda Domain Of Vaccinia Virus Dna Topoisomerase I Residues 1-77, Experimental Electron Density For Residues 1-77 |
PDB | 1asp_A | 0 | 35 | 549 | 8 | 546 | A Chain A, Amino Terminal 9kda Domain Of Vaccinia Virus Dna Topoisomerase I Residues 1-77, Experimental Electron Density For Residues 1-77 |
PDB | 1aso_B | 0 | 35 | 549 | 8 | 546 | A Chain A, Amino Terminal 9kda Domain Of Vaccinia Virus Dna Topoisomerase I Residues 1-77, Experimental Electron Density For Residues 1-77 |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
HO796073 | 515 | 51 | 542 | 0 |
HO801725 | 442 | 104 | 544 | 0 |
FL774063 | 196 | 17 | 212 | 0 |
FL774064 | 188 | 366 | 553 | 0 |
FL774064 | 20 | 366 | 385 | 0.35 |
Sequence Alignments (This image is cropped. Click for full image.) |
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