y
Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00061210m |
Family | GH28 |
Protein Properties | Length: 463 Molecular Weight: 50624.6 Isoelectric Point: 7.8882 |
Chromosome | Chromosome/Scaffold: 002057 Start: 7044 End: 9299 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 56 | 387 | 0 |
VDACAAAGGGRVLLPAPGDYLTATVHLRSRVVLEVAPGARLLGGTRQADYPPESRRWYVVLAENTTGAGITGGGEINGQGEAFVVTPSEVKNVMVSWNAT GDCLGDECRPRLVGFIDSKDVRIHDITLNQPAYWCLHLVRCDNTVIRNVSIFGDFKSPNNDGIDITDSNNTVITDCHIDTGDDALCPKSSTGPVYNLTAT NCWIRTKSCAIKFGSASYFNFNKLVFNNITIVDSHRGLGMQIRDGGNVSDVLFSNIKMSTRYYHPLWWGRAEPIYITTCPRHPDSKEGTISDIRFINISS VSENGVFLAGSKHGLLRNLKFKNVDLTYKRWT |
Full Sequence |
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Protein Sequence Length: 463 Download |
MASPPLQFAA PPLLLLLVLL AVAVPAARSS RVFSVADYGA VGDGSRYDTA AIQAAVDACA 60 AAGGGRVLLP APGDYLTATV HLRSRVVLEV APGARLLGGT RQADYPPESR RWYVVLAENT 120 TGAGITGGGE INGQGEAFVV TPSEVKNVMV SWNATGDCLG DECRPRLVGF IDSKDVRIHD 180 ITLNQPAYWC LHLVRCDNTV IRNVSIFGDF KSPNNDGIDI TDSNNTVITD CHIDTGDDAL 240 CPKSSTGPVY NLTATNCWIR TKSCAIKFGS ASYFNFNKLV FNNITIVDSH RGLGMQIRDG 300 GNVSDVLFSN IKMSTRYYHP LWWGRAEPIY ITTCPRHPDS KEGTISDIRF INISSVSENG 360 VFLAGSKHGL LRNLKFKNVD LTYKRWTNYT GGLYDYRPGC EKMVKHKTGG MMVEHVSGLE 420 IDNVRMRWAR GSLKGWDVNP ILFRPSTIDK LSFHDWQSVD VQ* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03003 | PLN03003 | 3.0e-8 | 164 | 310 | 197 | + Probable polygalacturonase At3g15720 | ||
PLN03010 | PLN03010 | 2.0e-8 | 196 | 257 | 62 | + polygalacturonase | ||
PLN02188 | PLN02188 | 6.0e-9 | 165 | 384 | 236 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 6.0e-16 | 165 | 383 | 238 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 4.0e-31 | 37 | 314 | 312 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | EEC84787.1 | 0 | 31 | 461 | 25 | 455 | hypothetical protein OsI_31840 [Oryza sativa Indica Group] |
GenBank | EEE69946.1 | 0 | 31 | 461 | 25 | 454 | hypothetical protein OsJ_29824 [Oryza sativa Japonica Group] |
RefSeq | NP_001063526.1 | 0 | 31 | 461 | 25 | 450 | Os09g0487600 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001148969.1 | 0 | 26 | 462 | 21 | 457 | polygalacturonase [Zea mays] |
RefSeq | XP_002462564.1 | 0 | 31 | 462 | 31 | 462 | hypothetical protein SORBIDRAFT_02g028280 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 2e-17 | 31 | 308 | 26 | 343 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 2e-17 | 31 | 308 | 26 | 343 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 2e-17 | 31 | 308 | 26 | 343 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 2e-17 | 31 | 308 | 26 | 343 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 2uvf_B | 0.000000000004 | 31 | 247 | 155 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |