Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00061381m |
Family | GH3 |
Protein Properties | Length: 779 Molecular Weight: 82391 Isoelectric Point: 6.077 |
Chromosome | Chromosome/Scaffold: 000981 Start: 6482 End: 11719 |
Description | Glycosyl hydrolase family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH3 | 83 | 332 | 0 |
GVPRLGVPAYKWWNEALHGLATSGKGLHFNAPGGVRTATSFPQVLLTAAAFDDGLWFRIGQAIGREARALFNIAQAEGLTMWSPNVNIFRDPRWGRGQET PGEDPAVASSYAAAFVRGIQGNGSSLLQTSACCKHATAYDLEDWGGVQRYSFVARVTAQDLEDTFNPPFRSCVVDGGATCVMCAYTAVNGVPSCADAGLL TGTVRGDWGLDGYVASDCDAVAIMRDAQRYAASPEDAVAVAIKAGLDIDC |
Full Sequence |
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Protein Sequence Length: 779 Download |
MASSSGLRRG IDGSGMVAAL LLSMALTAAA ADPPFSCGAS SAEAAQGYAF CDAALGPAAR 60 AADLVSRLTP AEKVAQLGDV APGVPRLGVP AYKWWNEALH GLATSGKGLH FNAPGGVRTA 120 TSFPQVLLTA AAFDDGLWFR IGQAIGREAR ALFNIAQAEG LTMWSPNVNI FRDPRWGRGQ 180 ETPGEDPAVA SSYAAAFVRG IQGNGSSLLQ TSACCKHATA YDLEDWGGVQ RYSFVARVTA 240 QDLEDTFNPP FRSCVVDGGA TCVMCAYTAV NGVPSCADAG LLTGTVRGDW GLDGYVASDC 300 DAVAIMRDAQ RYAASPEDAV AVAIKAGLDI DCGAYVQQHA TAAIQQGKLT EQDIDRALTN 360 LFAVRMRLGH FDGDPRSNAY GGLGAADICT PEHRSLTLEA AQDGIVLLKN DGGLLPLDRS 420 AVGSAAAIGP NADDGRALIA NYFGPPCEST TPLKGLQSYV SNLRFLAGCS SAACDAAATD 480 QAAALAGSAD YVFLFMGLSQ QQESEGKDRT SLLLPGMQQS LITAVADAAK RPVILVLLSG 540 GPVDITFAQS NPKIGAILWA GYPGQAGGLA IARVLFGDHN PSGRLPVTWY PEEFTKVPMT 600 DMRMRADPAT GYPGRSYRFY QGKTVYKFGY GLSYSSFARK LVSRTNTPAF STAVLTSLRE 660 TMAEEDGRSY HVDNIGTDGC EQLKFPATVE VQNHGPMGGK QSVLMFLRWP NATAGRPSSQ 720 LIGFRSQHLK AGEKANLRFD VSPCEHFSRV REDGKKVIDR GSHFLMVDNH EMEIRFEA* 780 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam01915 | Glyco_hydro_3_C | 6.0e-53 | 405 | 635 | 237 | + Glycosyl hydrolase family 3 C-terminal domain. This domain is involved in catalysis and may be involved in binding beta-glucan. This domain is found associated with pfam00933. | ||
COG1472 | BglX | 5.0e-54 | 81 | 435 | 362 | + Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism] | ||
pfam00933 | Glyco_hydro_3 | 6.0e-62 | 80 | 364 | 289 | + Glycosyl hydrolase family 3 N terminal domain. | ||
PRK15098 | PRK15098 | 3.0e-72 | 121 | 743 | 666 | + beta-D-glucoside glucohydrolase; Provisional | ||
PLN03080 | PLN03080 | 0 | 33 | 778 | 760 | + Probable beta-xylosidase; Provisional |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAX92971.1 | 0 | 32 | 778 | 24 | 771 | beta-D-xylosidase [Oryza sativa Japonica Group] |
RefSeq | NP_001067726.1 | 0 | 33 | 778 | 35 | 782 | Os11g0297800 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002489304.1 | 0 | 16 | 778 | 3 | 750 | hypothetical protein SORBIDRAFT_0010s007570 [Sorghum bicolor] |
RefSeq | XP_002489310.1 | 0 | 30 | 778 | 23 | 772 | hypothetical protein SORBIDRAFT_0010s010920 [Sorghum bicolor] |
RefSeq | XP_002489311.1 | 0 | 3 | 778 | 14 | 791 | hypothetical protein SORBIDRAFT_0010s012040 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3u48_B | 0 | 121 | 775 | 91 | 729 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3u48_A | 0 | 121 | 775 | 91 | 729 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3u4a_B | 0 | 121 | 775 | 91 | 729 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3u4a_A | 0 | 121 | 775 | 91 | 729 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 2x41_A | 4e-33 | 78 | 741 | 41 | 674 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
(1,4)-β-xylan degradation | 3.2.1.37-RXN | EC-3.2.1.37 | xylan 1,4-β-xylosidase |