y
Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00061751m |
Family | GT4 |
Protein Properties | Length: 857 Molecular Weight: 97491.8 Isoelectric Point: 8.2422 |
Chromosome | Chromosome/Scaffold: 002078 Start: 14677 End: 18877 |
Description | sucrose synthase 6 |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT4 | 573 | 740 | 0 |
DRNKPIIFSMARLDKVKNITGLVEWYGQNKKLRDLVNLVVVAGLLDASQSKDREEIEEINKMHNLIDKYQLKGQIRWIKAQTDRVRNGELYRCIADTKGA FVQPALYEAFGLTVIEAMNCGLATFATNQGGPAEIIVDGVSGFHINPMNGREASNKIADFFQKCKEDP |
Full Sequence |
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Protein Sequence Length: 857 Download |
MASKLSFRRT DSIGESLPDA LRQSRYQMRR CFQRYVSKGK RLLKNQQLIE ELEKSLDDKV 60 EKEKLVEGFL GYVICSTQEA VVLPPYVAFA VRMNPGIWEF VKVHSNDLSV EGITPSEYLK 120 FKETLYDENW AKDDNSLEVD FGALDLSTPH LTLPSSIGNG LQFVSKFMSS KLGGKPEISM 180 KPLLDYLLSL NYRGEKLMVN DTIDTVNKLQ TALLLAEVFV SGLPRYTPFP KFEQRFQEWG 240 LEKGWGDTAE RCKETLNCLS EVLQAPDPIN MEKFFSRVPS IFNIVVFSIH GYFGQEKVLG 300 LPDTGGQVVY ILDQVRALEE ELLQRIKHQG LSVTPKILVL TRLIPDAKGT KCNVELEPVE 360 NTKHSSILRV PFKTEDGKDL RQWVSRFDIY PYLERYAQDS CAKILDILEG KPDLIIGNYT 420 DGNLVASLMS SKLGVTQGTI AHALEKTKYE DSDVKWRDLD QKYHFSCQFT ADMIAMNTSD 480 FIITSTYQEI AGSKEKPGQY EHHYAFTMPG LCRYATGINV FDPKFNIAAP GADQSIYFPF 540 TQKQKRLTDL HPQIEELLYS KQDTNEHIGY LADRNKPIIF SMARLDKVKN ITGLVEWYGQ 600 NKKLRDLVNL VVVAGLLDAS QSKDREEIEE INKMHNLIDK YQLKGQIRWI KAQTDRVRNG 660 ELYRCIADTK GAFVQPALYE AFGLTVIEAM NCGLATFATN QGGPAEIIVD GVSGFHINPM 720 NGREASNKIA DFFQKCKEDP SYWNKVSTAG LQRIYECYTW KIYATKVLNM GSTYGFWKTL 780 NKEERIAKQR YLQMFYNLQF RNLAKTVPRV YEHPPQAPAS AGPSTMTVVR PKERKPRTRI 840 QRIMTSLVGP KSSTSD* 900 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
TIGR02472 | sucr_P_syn_N | 1.0e-64 | 284 | 770 | 497 | + sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase. | ||
cd03800 | GT1_Sucrose_synthase | 5.0e-115 | 283 | 768 | 486 | + This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light. | ||
PLN00142 | PLN00142 | 0 | 1 | 818 | 818 | + sucrose synthase | ||
TIGR02470 | sucr_synth | 0 | 25 | 809 | 785 | + sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria [Energy metabolism, Biosynthesis and degradation of polysaccharides]. | ||
pfam00862 | Sucrose_synth | 0 | 9 | 560 | 552 | + Sucrose synthase. Sucrose synthases catalyze the synthesis of sucrose from UDP-glucose and fructose. This family includes the bulk of the sucrose synthase protein. However the carboxyl terminal region of the sucrose synthases belongs to the glycosyl transferase family pfam00534. |
Gene Ontology | |
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GO Term | Description |
GO:0005985 | sucrose metabolic process |
GO:0009058 | biosynthetic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAE03896.2 | 0 | 1 | 856 | 1 | 855 | OSJNBb0026I12.4 [Oryza sativa (japonica cultivar-group)] |
EMBL | CAH66603.1 | 0 | 1 | 856 | 1 | 855 | H0211A12.6 [Oryza sativa (indica cultivar-group)] |
GenBank | EEC76883.1 | 0 | 1 | 856 | 1 | 855 | hypothetical protein OsI_15088 [Oryza sativa Indica Group] |
GenBank | EEE60617.1 | 0 | 1 | 835 | 1 | 826 | hypothetical protein OsJ_14034 [Oryza sativa Japonica Group] |
RefSeq | NP_001052432.1 | 0 | 1 | 856 | 1 | 844 | Os04g0309600 [Oryza sativa (japonica cultivar-group)] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3s29_H | 0 | 9 | 808 | 10 | 803 | A Chain A, The Structure Of Soybean Peroxidase |
PDB | 3s29_G | 0 | 9 | 808 | 10 | 803 | A Chain A, The Structure Of Soybean Peroxidase |
PDB | 3s29_F | 0 | 9 | 808 | 10 | 803 | A Chain A, The Structure Of Soybean Peroxidase |
PDB | 3s29_E | 0 | 9 | 808 | 10 | 803 | A Chain A, The Structure Of Soybean Peroxidase |
PDB | 3s29_D | 0 | 9 | 808 | 10 | 803 | A Chain A, The Structure Of Soybean Peroxidase |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
galactose degradation III | SUCROSE-SYNTHASE-RXN | EC-2.4.1.13 | sucrose synthase |
sucrose degradation III | SUCROSE-SYNTHASE-RXN | EC-2.4.1.13 | sucrose synthase |
UDP-glucose biosynthesis (from sucrose) | SUCROSE-SYNTHASE-RXN | EC-2.4.1.13 | sucrose synthase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
HO794519 | 804 | 9 | 812 | 0 |
BU103683 | 827 | 9 | 835 | 0 |
CX109054 | 602 | 104 | 705 | 0 |
FG227316 | 455 | 281 | 735 | 0 |
HO410243 | 626 | 190 | 809 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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