CAZyme Information

Basic Information
SpeciesPanicum virgatum
Cazyme IDPavirv00061810m
FamilyGH18
Protein PropertiesLength: 308 Molecular Weight: 33094.2 Isoelectric Point: 5.1787
ChromosomeChromosome/Scaffold: 001924 Start: 14420 End: 15343
Description
View CDS
External Links
CAZyDB
Signature Domain  Download full data set without filtering
FamilyStartEndEvalue
GH18612222.4e-22
  AFVIDYTTATEPPTPTDGRFNIFWQSTVLSAPAVAAIKQSNPNVRVAVSLGGATVNSRPVFFNITSVDSWVQNAVASLTGIVQQYGLDGIDIDYEQFQVD
  PATFAECVGRLVTALKSSGVIKFASIAPFDNADVQRHYQALWAGYGSVIDYVNFQFYAYSAS
Full Sequence
Protein Sequence     Length: 308     Download
MASSKLLAVA FLSSLLALHA PMATTAANSN LFRDYIGAIF NGVKFTDVPI NPGVRFDFIL    60
AFVIDYTTAT EPPTPTDGRF NIFWQSTVLS APAVAAIKQS NPNVRVAVSL GGATVNSRPV    120
FFNITSVDSW VQNAVASLTG IVQQYGLDGI DIDYEQFQVD PATFAECVGR LVTALKSSGV    180
IKFASIAPFD NADVQRHYQA LWAGYGSVID YVNFQFYAYS ASTTEAQYVS HFDDQIANYP    240
GGNILASFTT APTTTSVPIN TSLNACRTLQ SQGKLYGIFI WAADHSRSQG FRFDTQAQAL    300
LANAPSS* 
Functional Domains Download unfiltered results here
Cdd IDDomainE-ValueStartEndLengthDomain Description
cd02871GH18_chitinase_D-like3.0e-7105217127+
cd06548GH18_chitinase3.0e-79615560+
pfam00704Glyco_hydro_182.0e-1298219132+
cd00598GH18_chitinase-like4.0e-1358217169+
cd06544GH18_narbonin9.0e-12231286257+
Gene Ontology
GO TermDescription
GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0005975carbohydrate metabolic process
Annotations - NR Download unfiltered results here
SourceHit IDE-ValueQuery StartQuery EndHit StartHit EndDescription
GenBankAAO15366.10283072281AF330230_1 chitinase [Oryza sativa Japonica Group]
GenBankACF88258.102130623307unknown [Zea mays]
RefSeqNP_001064605.102830727306Os10g0416100 [Oryza sativa (japonica cultivar-group)]
RefSeqNP_001152001.102130623307chitinase 2 [Zea mays]
RefSeqXP_002467243.1013061308hypothetical protein SORBIDRAFT_01g021920 [Sorghum bicolor]
Annotations - PDB Download unfiltered results here
SourceHit IDE-ValueQuery StartQuery EndHit StartHit EndDescription
PDB3sim_B0313012273A Chain A, Crystallographic Structure Analysis Of Family 18 Chitinase From Crocus Vernus
PDB3sim_A0313012273A Chain A, Crystallographic Structure Analysis Of Family 18 Chitinase From Crocus Vernus
PDB1nar_A4e-27312864266A Chain A, Crystal Structure Of Narbonin Refined At 1.8 Angstroms Resolution
PDB3qok_A0.0000079422398231A Chain A, Crystal Structure Of Putative Chitinase Ii From Klebsiella Pneumoniae
PDB4ac1_X0.00017528156255X Chain X, The Structure Of A Fungal Endo-Beta-N-Acetylglucosaminidase From Glycosyl Hydrolase Family 18, At 1.3a Resolution
Metabolic Pathways
Pathway NameReactionECProtein Name
chitin degradation II3.2.1.14-RXNEC-3.2.1.14chitinase
chitin degradation IIRXN-12623EC-3.2.1.14chitinase
chitin degradation IIRXN-12624EC-3.2.1.14chitinase
chitin degradation III (carnivorous plants)3.2.1.14-RXNEC-3.2.1.14chitinase
Signal Peptide
Cleavage Site
26
Hydropathy
EST Download unfiltered results here
HitLengthStartEndEValue
CT853760288193060
EE176053256212760
EE032877254212740
EE176407253212730
HO304470222853060
Orthologous Group
SpeciesID
Aquilegia coeruleaAquca_046_00008.1Aquca_014_00353.1Aquca_010_00636.1Aquca_027_00184.1
Brachypodium distachyonBradi3g26850.1Bradi3g26810.1Bradi3g26840.1
Carica papayaevm.model.supercontig_139.6
Citrus clementinaCiclev10028881mCiclev10003729m
Citrus sinensisorange1.1g021511morange1.1g046094m
Eucalyptus grandisEucgr.B02439.1Eucgr.J02106.1
Fragaria vescamrna14033.1-v1.0-hybrid.59.211mrna14019.1-v1.0-hybridmrna15882.1-v1.0-hybridmrna14034.1-v1.0-hybridmrna17899.1-v1.0-hybrid
mrna22564.1-v1.0-hybrid
Glycine maxGlyma11g15512.1Glyma09g21615.1Glyma13g40590.1
Gossypium raimondiiGorai.003G135700.1Gorai.003G135800.1Gorai.003G134100.1Gorai.003G129600.1Gorai.011G120000.1
Gorai.003G138400.1
Linum usitatissimumLus10005172
Malus domesticaMDP0000904158MDP0000885802MDP0000644797MDP0000312089
Manihot esculentacassava4.1_024209mcassava4.1_027074m
Medicago truncatulaMedtr6g079630.1Medtr2g096030.1
Mimulus guttatusmgv1a019267mmgv1a024804m
Oryza sativaLOC_Os10g28050.1LOC_Os10g28080.1
Panicum virgatumPavirv00014582mPavirv00031712m
Phaseolus vulgarisPhvul.011G069900.1
Picea abiesMA_38396g0010MA_10427109g0010
Populus trichocarpaPotri.012G102400.1Potri.015G100500.1Potri.015G100600.1Potri.001G341700.1
Prunus persicappa023801mppa009038mppa009096m
Ricinus communis30039.m00023530039.m000234
Setaria italicaSi022612mSi026720mSi028172mSi036765mSi036774m
Selaginella moellendorffii41118115493
Sorghum bicolorSb01g021920.1
Sequence Alignments  (This image is cropped. Click for full image.)
Phylogeny