Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00061957m |
Family | GH28 |
Protein Properties | Length: 518 Molecular Weight: 54672.2 Isoelectric Point: 9.3995 |
Chromosome | Chromosome/Scaffold: 001876 Start: 105 End: 1850 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 155 | 490 | 0 |
WKAACASSRPAVVLVPGGRRYLLKLVTLHGPCRSSVTLTVKGTLVASPNRADWSDRDRRLWIVFRSVSKLIINGGGTVDGNGNKWWPHSCKITKALPCKE APTALSFHFCTNLRVEDLKIVNSQQIHMSVEDCTNAHLARLSITAPGTSPNTDGIHITRSKDVKVTDCKIKTGDDCISIEHGTHNLHVSKVVCGPGHGIS IGSLGDDNSRAEVSGIIIDTVQFYGTTNGARIKTYQGGSGYAKDLTFQNMIMYNVKNPIIIDQNYCDKNKPCKEQRSAVEVSNVVFKNIRGTTITKDAIK LKCSKHVPCHGITLQNINLKMQGGKGATESTCQNAK |
Full Sequence |
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Protein Sequence Length: 518 Download |
MASPRLVFVA PLLALLVVSV GALESAGGTA TNGTSPDGAS SLASSADGAA ARTIRGGSLG 60 ASSSQGVLSL DRYGGSALAA LTLASRLVFA APLLAWLFAP SALEAPGRTN GTSIDGADAG 120 TTKARPLGSS VFALDRYGGR GDGRHDDTQA LARAWKAACA SSRPAVVLVP GGRRYLLKLV 180 TLHGPCRSSV TLTVKGTLVA SPNRADWSDR DRRLWIVFRS VSKLIINGGG TVDGNGNKWW 240 PHSCKITKAL PCKEAPTALS FHFCTNLRVE DLKIVNSQQI HMSVEDCTNA HLARLSITAP 300 GTSPNTDGIH ITRSKDVKVT DCKIKTGDDC ISIEHGTHNL HVSKVVCGPG HGISIGSLGD 360 DNSRAEVSGI IIDTVQFYGT TNGARIKTYQ GGSGYAKDLT FQNMIMYNVK NPIIIDQNYC 420 DKNKPCKEQR SAVEVSNVVF KNIRGTTITK DAIKLKCSKH VPCHGITLQN INLKMQGGKG 480 ATESTCQNAK WRKSGTVIPQ PCTAETYEYE GLELSSI* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 6.0e-90 | 148 | 502 | 357 | + polygalacturonase | ||
PLN02188 | PLN02188 | 2.0e-103 | 148 | 503 | 359 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 2.0e-111 | 159 | 490 | 332 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 1.0e-130 | 123 | 502 | 380 | + Probable polygalacturonase | ||
PLN02218 | PLN02218 | 9.0e-134 | 148 | 500 | 355 | + polygalacturonase ADPG |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_001140231.1 | 0 | 98 | 505 | 27 | 441 | hypothetical protein LOC100272271 [Zea mays] |
RefSeq | NP_001142092.1 | 0 | 129 | 504 | 90 | 478 | hypothetical protein LOC100274254 [Zea mays] |
RefSeq | XP_002463688.1 | 0 | 130 | 504 | 60 | 434 | hypothetical protein SORBIDRAFT_01g004230 [Sorghum bicolor] |
RefSeq | XP_002466241.1 | 0 | 101 | 505 | 16 | 434 | hypothetical protein SORBIDRAFT_01g004190 [Sorghum bicolor] |
RefSeq | XP_002466242.1 | 0 | 131 | 505 | 74 | 451 | hypothetical protein SORBIDRAFT_01g004220 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 7e-23 | 226 | 473 | 113 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1rmg_A | 5e-21 | 137 | 479 | 26 | 344 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 1nhc_F | 6e-18 | 229 | 488 | 77 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 6e-18 | 229 | 488 | 77 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 6e-18 | 229 | 488 | 77 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |