y
Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00061958m |
Family | GH28 |
Protein Properties | Length: 391 Molecular Weight: 41057.2 Isoelectric Point: 8.1749 |
Chromosome | Chromosome/Scaffold: 001876 Start: 7112 End: 8812 |
Description | polygalacturonase abscission zone A. thaliana |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 37 | 374 | 0 |
WKAACASPLPAVVLVPGGKRYLLSNVVKLPGPCKSASVTLTVQGTLVASPNRADWSDRDRRHWVVFRAVDGLTVNGGGVIDGNGEAWWKNSCKINKALPC KEAPTALSFHYCSSLRVQDLKIVNSQQIHMSIEDCSNVQVAGLSITAPGTSPNTDGIHITRSNDVQVTNCNIKTGDDCISIENGTHNLHVSKVVCGPGHG ISIGSLGDDGSRAEVSGITIDSVQLHGTSNGARIKTYQGGSGYARDITFQNMIMGSVKNPIIIDQNYCDNAKPCREQGSAVEVSNVVFRNIRGTTITKDA IKLSCSKNAPCHGITLQNIDLKMEGGNGAAESTCQNAR |
Full Sequence |
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Protein Sequence Length: 391 Download |
MGGSSLAAAQ SGVFSLDSYG ARGDGSHDDA PALARAWKAA CASPLPAVVL VPGGKRYLLS 60 NVVKLPGPCK SASVTLTVQG TLVASPNRAD WSDRDRRHWV VFRAVDGLTV NGGGVIDGNG 120 EAWWKNSCKI NKALPCKEAP TALSFHYCSS LRVQDLKIVN SQQIHMSIED CSNVQVAGLS 180 ITAPGTSPNT DGIHITRSND VQVTNCNIKT GDDCISIENG THNLHVSKVV CGPGHGISIG 240 SLGDDGSRAE VSGITIDSVQ LHGTSNGARI KTYQGGSGYA RDITFQNMIM GSVKNPIIID 300 QNYCDNAKPC REQGSAVEVS NVVFRNIRGT TITKDAIKLS CSKNAPCHGI TLQNIDLKME 360 GGNGAAESTC QNARWKKAGT VLPQPCTSQN * 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 3.0e-85 | 19 | 390 | 373 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 2.0e-99 | 41 | 373 | 333 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 1.0e-102 | 2 | 387 | 389 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02793 | PLN02793 | 4.0e-125 | 13 | 390 | 378 | + Probable polygalacturonase | ||
PLN02218 | PLN02218 | 1.0e-128 | 15 | 384 | 372 | + polygalacturonase ADPG |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_001140231.1 | 0 | 13 | 390 | 63 | 442 | hypothetical protein LOC100272271 [Zea mays] |
RefSeq | NP_001142092.1 | 0 | 6 | 388 | 85 | 478 | hypothetical protein LOC100274254 [Zea mays] |
RefSeq | XP_002463688.1 | 0 | 13 | 386 | 61 | 432 | hypothetical protein SORBIDRAFT_01g004230 [Sorghum bicolor] |
RefSeq | XP_002466241.1 | 0 | 13 | 389 | 60 | 434 | hypothetical protein SORBIDRAFT_01g004190 [Sorghum bicolor] |
RefSeq | XP_002466242.1 | 0 | 13 | 390 | 74 | 452 | hypothetical protein SORBIDRAFT_01g004220 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 2e-23 | 110 | 357 | 113 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1rmg_A | 1e-20 | 18 | 363 | 25 | 344 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 1hg8_A | 5e-20 | 39 | 352 | 16 | 326 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
PDB | 1nhc_F | 3e-19 | 49 | 372 | 26 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 3e-19 | 49 | 372 | 26 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
FL930633 | 195 | 197 | 391 | 0 |
FL930634 | 193 | 199 | 391 | 0 |
CA139845 | 231 | 131 | 361 | 0 |
DV514791 | 208 | 13 | 220 | 0 |
DV536718 | 209 | 13 | 220 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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