Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00062067m |
Family | AA3 |
Protein Properties | Length: 595 Molecular Weight: 63165 Isoelectric Point: 8.4335 |
Chromosome | Chromosome/Scaffold: 001476 Start: 7770 End: 10177 |
Description | Glucose-methanol-choline (GMC) oxidoreductase family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
AA3 | 47 | 586 | 0 |
AYYDYIIVGGGTAGCPLAATLSQGSRVLLLERGGSPYEDGRVLSMLRFSDVLADTSASSPSQRFVSEDGVINSRPRVLGGGSCINAGFFTRAGAGYVRGV GWDPREVLAAYRWVEDVVAFQPALGPWQAAVRRGLLETGVLPDNGFTYDHIPGTKVGGSIFDADGRRHTAADLLRYSNPDGIDLFLRARVARILFGYKGT KPVARGVVYRDAQGGTHVAYLNRGAANEVILSAGALGSPQQLMLSGIGPGEHLRSLGIDVILDLPGVGQGMSDNPMNAIYVPSPSPVEVSLIQVVGITRF GSYIEGASGANWNSHPSGTGTGTPPPRNLGMFSPQTGQLATVPPAQRTPEAIARAVAAMSQVPDAALRGGFILEKVLGPQSTGSLALRNLDPDDNPSVRF NYFAHPDDLRRCVAGISAIERVIRSGAFARFTYPNFAFPAALNVTADFPVNTLYGGRRFGGGGGDPRALEQFCRDTVMTIWHYHGGCQVGRVVDRDYKVL GVEALRVIDGSTFNASPGTNPQATVMMLGRYMGVKLLKER |
Full Sequence |
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Protein Sequence Length: 595 Download |
MASLLISAQA MAVFTVACFF ALLCMAQQVR AVNYTFMREA VNAPPVAYYD YIIVGGGTAG 60 CPLAATLSQG SRVLLLERGG SPYEDGRVLS MLRFSDVLAD TSASSPSQRF VSEDGVINSR 120 PRVLGGGSCI NAGFFTRAGA GYVRGVGWDP REVLAAYRWV EDVVAFQPAL GPWQAAVRRG 180 LLETGVLPDN GFTYDHIPGT KVGGSIFDAD GRRHTAADLL RYSNPDGIDL FLRARVARIL 240 FGYKGTKPVA RGVVYRDAQG GTHVAYLNRG AANEVILSAG ALGSPQQLML SGIGPGEHLR 300 SLGIDVILDL PGVGQGMSDN PMNAIYVPSP SPVEVSLIQV VGITRFGSYI EGASGANWNS 360 HPSGTGTGTP PPRNLGMFSP QTGQLATVPP AQRTPEAIAR AVAAMSQVPD AALRGGFILE 420 KVLGPQSTGS LALRNLDPDD NPSVRFNYFA HPDDLRRCVA GISAIERVIR SGAFARFTYP 480 NFAFPAALNV TADFPVNTLY GGRRFGGGGG DPRALEQFCR DTVMTIWHYH GGCQVGRVVD 540 RDYKVLGVEA LRVIDGSTFN ASPGTNPQAT VMMLGRYMGV KLLKERMLEE GPGA* 600 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PRK02106 | PRK02106 | 5.0e-14 | 425 | 575 | 155 | + choline dehydrogenase; Validated | ||
PRK02106 | PRK02106 | 2.0e-33 | 49 | 319 | 327 | + choline dehydrogenase; Validated | ||
TIGR01810 | betA | 2.0e-35 | 50 | 575 | 579 | + choline dehydrogenase. Choline dehydrogenase catalyzes the conversion of exogenously supplied choline into the intermediate glycine betaine aldehyde, as part of a two-step oxidative reaction leading to the formation of osmoprotectant betaine. This enzymatic system can be found in both gram-positive and gram-negative bacteria. As in Escherichia coli , Staphylococcus xylosus , and Sinorhizobium meliloti, this enzyme is found associated in a transciptionally co-induced gene cluster with betaine aldehyde dehydrogenase, the second catalytic enzyme in this reaction. Other gram-positive organisms have been shown to employ a different enzymatic system, utlizing a soluable choline oxidase or type III alcohol dehydrogenase instead of choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified [Cellular processes, Adaptations to atypical conditions]. | ||
COG2303 | BetA | 2.0e-48 | 49 | 588 | 594 | + Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism] | ||
PLN02785 | PLN02785 | 0 | 12 | 587 | 587 | + Protein HOTHEAD |
Gene Ontology | |
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GO Term | Description |
GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors |
GO:0050660 | flavin adenine dinucleotide binding |
GO:0055114 | oxidation-reduction process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACN31684.1 | 0 | 13 | 591 | 4 | 576 | unknown [Zea mays] |
DDBJ | BAD29242.1 | 0 | 22 | 593 | 16 | 619 | putative mandelonitrile lyase [Oryza sativa Japonica Group] |
GenBank | EAY87068.1 | 0 | 22 | 593 | 16 | 580 | hypothetical protein OsI_08464 [Oryza sativa Indica Group] |
RefSeq | NP_001149739.1 | 0 | 13 | 591 | 4 | 576 | protein HOTHEAD [Zea mays] |
RefSeq | XP_002454481.1 | 0 | 1 | 590 | 1 | 583 | hypothetical protein SORBIDRAFT_04g031910 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3gdp_B | 0 | 35 | 586 | 13 | 517 | A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With Glucose Dehydrogenase Activity |
PDB | 3gdp_A | 0 | 35 | 586 | 13 | 517 | A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With Glucose Dehydrogenase Activity |
PDB | 3gdn_B | 0 | 35 | 586 | 13 | 517 | A Chain A, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde |
PDB | 3gdn_A | 0 | 35 | 586 | 13 | 517 | A Chain A, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde |
PDB | 1ju2_B | 0 | 35 | 586 | 13 | 517 | A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
cutin biosynthesis | RXN-2121 | EC-1.1.1 | 18-hydroxyoleate dehydrogenase |
cutin biosynthesis | RXN-9802 | EC-1.1.1 | 16-hydroxypalmitate dehydrogenase |
suberin biosynthesis | RXN-2121 | EC-1.1.1 | 18-hydroxyoleate dehydrogenase |