Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00062256m |
Family | GH28 |
Protein Properties | Length: 453 Molecular Weight: 46752.7 Isoelectric Point: 6.5852 |
Chromosome | Chromosome/Scaffold: 001582 Start: 22481 End: 24703 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 87 | 417 | 0 |
WSAACAAGGASTVLVPASYVFLVGPITFTGDSCEPNMDFQVDGTILAHTGSPAWRSGVLTQWLEFKNVRGLAIQGSGTVDGQGSHWWSGGGSAAGDAEME LDSDRAGTSNNRPTAVRVFQGANVTVSGITIRNSPRFHLTVDTCRAVQVHDVTVSSPGDSPNTDGIHLAGSVGVSIHRSTIACGDDCISIQDGCSDVFIR EVHCGPGHGISIGGLGKGGASAAVSDVTVQDVTLNQTMTGVRIKTWQGGSGSVKNVRFSGVTVSAVKTPVVIDQYYCDHATCSNQTAAVAVAGVSYQGVA GTYTERPVYLACSDAAPCSGIHLADIQLAPV |
Full Sequence |
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Protein Sequence Length: 453 Download |
MKRRSIPNAS CANATIHLAA LLLLVTCLPV VLPPTCLARR ESHHRPPPGG RSHHPPPPAP 60 VMPPLPPLPS AATFSVLDHG AAFADAWSAA CAAGGASTVL VPASYVFLVG PITFTGDSCE 120 PNMDFQVDGT ILAHTGSPAW RSGVLTQWLE FKNVRGLAIQ GSGTVDGQGS HWWSGGGSAA 180 GDAEMELDSD RAGTSNNRPT AVRVFQGANV TVSGITIRNS PRFHLTVDTC RAVQVHDVTV 240 SSPGDSPNTD GIHLAGSVGV SIHRSTIACG DDCISIQDGC SDVFIREVHC GPGHGISIGG 300 LGKGGASAAV SDVTVQDVTL NQTMTGVRIK TWQGGSGSVK NVRFSGVTVS AVKTPVVIDQ 360 YYCDHATCSN QTAAVAVAGV SYQGVAGTYT ERPVYLACSD AAPCSGIHLA DIQLAPVRDG 420 GHHLDGPFCW KAYGDQVKPV EPPVDCLLAE AP* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03003 | PLN03003 | 1.0e-45 | 99 | 447 | 355 | + Probable polygalacturonase At3g15720 | ||
PLN03010 | PLN03010 | 2.0e-55 | 97 | 414 | 320 | + polygalacturonase | ||
PLN02218 | PLN02218 | 5.0e-56 | 98 | 414 | 318 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 1.0e-62 | 97 | 414 | 319 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 2.0e-72 | 97 | 443 | 349 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAD46483.1 | 0 | 13 | 452 | 3 | 430 | polygalacturonase PG1 [Glycine max] |
GenBank | ACU24545.1 | 0 | 13 | 452 | 3 | 430 | unknown [Glycine max] |
GenBank | EAZ00960.1 | 0 | 1 | 452 | 2 | 432 | hypothetical protein OsI_22993 [Oryza sativa Indica Group] |
GenBank | EAZ37024.1 | 0 | 1 | 452 | 2 | 429 | hypothetical protein OsJ_21369 [Oryza sativa Japonica Group] |
RefSeq | XP_002266600.1 | 0 | 56 | 452 | 72 | 493 | PREDICTED: hypothetical protein [Vitis vinifera] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 4e-24 | 159 | 362 | 113 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 4e-23 | 165 | 415 | 80 | 319 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 4e-23 | 165 | 415 | 80 | 319 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 4e-23 | 165 | 415 | 80 | 319 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 4e-23 | 165 | 415 | 80 | 319 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |