Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00062373m |
Family | GH28 |
Protein Properties | Length: 436 Molecular Weight: 45679.9 Isoelectric Point: 8.5363 |
Chromosome | Chromosome/Scaffold: 001967 Start: 18580 End: 20569 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 58 | 388 | 0 |
AACRVPRATVLLPSGHRFLVSPVTLQGPCSTRLTLQVDGTLLAPPDMDSWPRSRRPLQWLNFKWLNGFTVQGAGTVDGQSITSLHDSSSPANAPHQRSTG HWHSSGAKPTLVRFYGSFNVTVRNIRISNSPQCHLKFDSSGGIKVKNVTISSPGDSPNTDGIHLQNTRDVEIRSSSIGCGDDCVSIQTGCSNVHMKYIIC NPGHGISVGGLGKDNSLACVSDVVAENINVQNALYGVRIKTWQGGVGSVRNVTFANVRVANVATPIAIDQFYCDWGGARCANRTGAVAITGVAYRRVAGT YSFQPVRLACSDARPCTGVSMVDVRLWPAAS |
Full Sequence |
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Protein Sequence Length: 436 Download |
MWSSVVVVPA ALLAGVLLCL AAPAAAAARP ATLSVLSFGA AADGVTDDAE ALVAAWRAAC 60 RVPRATVLLP SGHRFLVSPV TLQGPCSTRL TLQVDGTLLA PPDMDSWPRS RRPLQWLNFK 120 WLNGFTVQGA GTVDGQSITS LHDSSSPANA PHQRSTGHWH SSGAKPTLVR FYGSFNVTVR 180 NIRISNSPQC HLKFDSSGGI KVKNVTISSP GDSPNTDGIH LQNTRDVEIR SSSIGCGDDC 240 VSIQTGCSNV HMKYIICNPG HGISVGGLGK DNSLACVSDV VAENINVQNA LYGVRIKTWQ 300 GGVGSVRNVT FANVRVANVA TPIAIDQFYC DWGGARCANR TGAVAITGVA YRRVAGTYSF 360 QPVRLACSDA RPCTGVSMVD VRLWPAASAP AGTVAPLCWN SYGEASGTIE PLGAGCLQRS 420 NGYAMPLTQP SNYTC* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 5.0e-67 | 37 | 383 | 352 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN03010 | PLN03010 | 2.0e-68 | 38 | 408 | 377 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 1.0e-70 | 65 | 383 | 320 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 2.0e-78 | 38 | 398 | 373 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 2.0e-97 | 38 | 423 | 390 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAD88046.1 | 0 | 12 | 435 | 2 | 372 | putative polygalacturonase PG1 [Oryza sativa Japonica Group] |
GenBank | EAY74476.1 | 0 | 12 | 435 | 2 | 382 | hypothetical protein OsI_02367 [Oryza sativa Indica Group] |
GenBank | EEE54776.1 | 0 | 12 | 435 | 2 | 500 | hypothetical protein OsJ_02171 [Oryza sativa Japonica Group] |
RefSeq | XP_002266099.1 | 0 | 33 | 435 | 82 | 476 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002457998.1 | 0 | 22 | 435 | 21 | 420 | hypothetical protein SORBIDRAFT_03g025260 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1rmg_A | 2e-21 | 24 | 403 | 12 | 355 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 1bhe_A | 3e-19 | 127 | 337 | 113 | 322 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 2iq7_G | 0.000000000000004 | 159 | 357 | 88 | 292 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 0.000000000000004 | 159 | 357 | 88 | 292 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 0.000000000000004 | 159 | 357 | 88 | 292 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |