Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00062581m |
Family | CBM43 |
Protein Properties | Length: 492 Molecular Weight: 52582.5 Isoelectric Point: 5.5441 |
Chromosome | Chromosome/Scaffold: 001539 Start: 5394 End: 9273 |
Description | O-Glycosyl hydrolases family 17 protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 364 | 445 | 3e-30 |
CVANSSAPHSALKHSLDWACGPGSANCSAIQPGQPCYESDNIVAVASYAFNDYYHRTQASGGTCSFNGTAMITSTDPSHGSC | |||
GH17 | 25 | 346 | 0 |
VGITIGNEMSNPPSATDIVAILKEKKIQHVRLIDSNHQMLTALANTGIEVMVGVPNDQLLRVGQSRSTAADWINKNVAAYVPATNITYIAVGDEVLTNIP NAALVLVPALRFLQSALLAANLNTQVKISSPHSMDMISKAFPPSTATFNSTWNTIMSRYLQFLKDTGSSFMLNAQPYYGYVGGQGIFPLEYALFRSLNPN SQISDPNTNLFYTNMFDAIIDATYNSIQAMNFTGIPVLVTASGWPWRGGPNEKAATVDNALAYNTNLIRHVLNNSGTPSQPMNQSSTYIFELFNEDLRSG PESEKSWGIMFPNATTVYSLSF |
Full Sequence |
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Protein Sequence Length: 492 Download |
MSPKRPQGVV MLLMLMAFDV SGAFVGITIG NEMSNPPSAT DIVAILKEKK IQHVRLIDSN 60 HQMLTALANT GIEVMVGVPN DQLLRVGQSR STAADWINKN VAAYVPATNI TYIAVGDEVL 120 TNIPNAALVL VPALRFLQSA LLAANLNTQV KISSPHSMDM ISKAFPPSTA TFNSTWNTIM 180 SRYLQFLKDT GSSFMLNAQP YYGYVGGQGI FPLEYALFRS LNPNSQISDP NTNLFYTNMF 240 DAIIDATYNS IQAMNFTGIP VLVTASGWPW RGGPNEKAAT VDNALAYNTN LIRHVLNNSG 300 TPSQPMNQSS TYIFELFNED LRSGPESEKS WGIMFPNATT VYSLSFEDVA TTIPESPALR 360 GMFCVANSSA PHSALKHSLD WACGPGSANC SAIQPGQPCY ESDNIVAVAS YAFNDYYHRT 420 QASGGTCSFN GTAMITSTDP SHGSCIFAGS TGANGDGGTA SGPVSPDSFA SRSQSCWLTH 480 LAAALLLILV V* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG5309 | COG5309 | 0.0004 | 251 | 334 | 87 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
pfam07983 | X8 | 3.0e-16 | 364 | 434 | 80 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 9.0e-36 | 363 | 447 | 85 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
pfam00332 | Glyco_hydro_17 | 2.0e-78 | 25 | 346 | 322 | + Glycosyl hydrolases family 17. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | EEE67465.1 | 0 | 22 | 490 | 85 | 553 | hypothetical protein OsJ_24859 [Oryza sativa Japonica Group] |
RefSeq | NP_001060087.1 | 0 | 18 | 490 | 167 | 639 | Os07g0577300 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001131285.1 | 0 | 1 | 491 | 1 | 490 | hypothetical protein LOC100192598 [Zea mays] |
RefSeq | NP_001149308.1 | 0 | 1 | 491 | 1 | 492 | glucan endo-1,3-beta-glucosidase 4 [Zea mays] |
RefSeq | XP_002460914.1 | 0 | 1 | 491 | 1 | 492 | hypothetical protein SORBIDRAFT_02g037380 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2cyg_A | 0 | 25 | 346 | 1 | 312 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 1ghs_B | 0 | 25 | 346 | 1 | 306 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
PDB | 1ghs_A | 0 | 25 | 346 | 1 | 306 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
PDB | 3f55_D | 0 | 25 | 346 | 2 | 315 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
PDB | 3f55_C | 0 | 25 | 346 | 2 | 315 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |