CAZyme Information

Basic Information
SpeciesPanicum virgatum
Cazyme IDPavirv00062646m
FamilyGH20
Protein PropertiesLength: 411 Molecular Weight: 45611.1 Isoelectric Point: 6.6465
ChromosomeChromosome/Scaffold: 002160 Start: 11132 End: 16425
Descriptionbeta-hexosaminidase 3
View CDS
External Links
CAZyDB
Signature Domain  Download full data set without filtering
FamilyStartEndEvalue
GH201743970
  MDVPRFHYRGLLIDTSRHYLPVPVIKSVIDSMTFSKLNVLHWHIVDEQSFPLQIPSYPKLWNGAYSYSERYTFDDAIDIVQYAEKRGVNVLAEIDVPGHA
  LSWGVGYPSLWPSATCKEPLDVSNDFTFQVINGILSDFGKIFKFKFVHLGGDEVNTSCWTTTPRIKSWLIQHGMNESDAYRYFVLRAQKIAISHGYDIIN
  WEETFNNFGDKLDRKTVVHNWYLL
Full Sequence
Protein Sequence     Length: 411     Download
MAPAARLLLA LLAAAAAAVG PCAGAGAGAG RVDLWPMPAS VARGAQTLLV SRDLKLSTPG    60
SNYSDGRGIL REAFQRMLAV VELDHVVNGS YGGRGSPVLA GVRVVVRSPN DELNFGVDES    120
YKLSVPATGN PLYAQIEAQT VFGALHALET FSQLCKFDFN ARLIELHSAP WTIMDVPRFH    180
YRGLLIDTSR HYLPVPVIKS VIDSMTFSKL NVLHWHIVDE QSFPLQIPSY PKLWNGAYSY    240
SERYTFDDAI DIVQYAEKRG VNVLAEIDVP GHALSWGVGY PSLWPSATCK EPLDVSNDFT    300
FQVINGILSD FGKIFKFKFV HLGGDEVNTS CWTTTPRIKS WLIQHGMNES DAYRYFVLRA    360
QKIAISHGYD IINWEETFNN FGDKLDRKTV VHNWYLLASY WLALDKYCID *             420
Functional Domains Download unfiltered results here
Cdd IDDomainE-ValueStartEndLengthDomain Description
cd02742GH20_hexosaminidase2.0e-41181394226+
cd06563GH20_chitobiase-like1.0e-46179394246+
cd06570GH20_chitobiase-like_15.0e-53179394227+
pfam00728Glyco_hydro_203.0e-76179395230+
cd06562GH20_HexA_HexB-like4.0e-103179394228+
Gene Ontology
GO TermDescription
GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0004563beta-N-acetylhexosaminidase activity
GO:0005975carbohydrate metabolic process
Annotations - NR Download unfiltered results here
SourceHit IDE-ValueQuery StartQuery EndHit StartHit EndDescription
GenBankAAT77374.103239427387putative beta-N-acetylhexosaminidase [Oryza sativa Japonica Group]
GenBankACN36154.103239427387unknown [Zea mays]
GenBankEEC79230.103239427387hypothetical protein OsI_19972 [Oryza sativa Indica Group]
RefSeqNP_001045052.103239428388Os01g0891000 [Oryza sativa (japonica cultivar-group)]
RefSeqNP_001055557.103239431391Os05g0415700 [Oryza sativa (japonica cultivar-group)]
Annotations - PDB Download unfiltered results here
SourceHit IDE-ValueQuery StartQuery EndHit StartHit EndDescription
PDB3lmy_B01139436424A Chain A, The Crystal Structure Of Beta-Hexosaminidase B In Complex With Pyrimethamine
PDB3lmy_A01139436424A Chain A, The Crystal Structure Of Beta-Hexosaminidase B In Complex With Pyrimethamine
PDB1o7a_F0173941383A Chain A, Human Beta-Hexosaminidase B
PDB1o7a_E0173941383A Chain A, Human Beta-Hexosaminidase B
PDB1o7a_D0173941383A Chain A, Human Beta-Hexosaminidase B
Metabolic Pathways
Pathway NameReactionECProtein Name
chitin degradation IIRXN-12625EC-3.2.1.52β-L-N-acetylhexosaminidase
chitin degradation IIRXN-12626EC-3.2.1.52β-L-N-acetylhexosaminidase
Transmembrane Domains
StartEnd
729
Signal Peptide
Cleavage Site
18
Hydropathy
EST Download unfiltered results here
HitLengthStartEndEValue
ES3024942801153940
FL719178266503150
EE161151275333070
EC876909273333050
EE039897267332990
Orthologous Group
SpeciesID
Aquilegia coeruleaAquca_022_00071.4Aquca_022_00071.3Aquca_022_00071.2Aquca_022_00071.1Aquca_010_00682.1
Aquca_004_00645.1
Arabidopsis lyrata475658485946470561
Arabidopsis thalianaAT1G65590.1AT3G55260.1AT1G05590.1
Brachypodium distachyonBradi2g57420.1Bradi2g25310.1Bradi2g37460.1Bradi3g44607.1Bradi1g69660.1
Bradi1g23740.1
Brassica rapaBra004121Bra014765Bra032460
Carica papayaevm.model.supercontig_197.26
Capsella rubellaCarubv10020116mCarubv10016974mCarubv10011603m
Chlamydomonas reinhardtiig11709.t1
Citrus clementinaCiclev10014808mCiclev10031174mCiclev10031139mCiclev10031669mCiclev10033772m
Ciclev10019509mCiclev10024601m
Citrus sinensisorange1.1g008945morange1.1g013337morange1.1g008821morange1.1g014971morange1.1g044344m
orange1.1g007722morange1.1g007610m
Cucumis sativusCucsa.165600.1Cucsa.178740.1Cucsa.165600.2.144.314Cucsa.165600.2.144.314Cucsa.177460.1
Cucsa.165600.2.312.421Cucsa.165600.2.312.421
Eucalyptus grandisEucgr.G02896.1Eucgr.L01476.1Eucgr.K02799.2Eucgr.K02799.1Eucgr.K02799.3
Eucgr.K02798.2Eucgr.K02798.1
Fragaria vescamrna26730.1-v1.0-hybridmrna02330.1-v1.0-hybrid
Glycine maxGlyma18g52290.1Glyma02g10570.1Glyma10g43710.1Glyma20g38400.1Glyma08g17200.1
Glyma08g16970.1Glyma15g41986.1
Gossypium raimondiiGorai.002G136400.2Gorai.002G136400.1Gorai.011G246500.1Gorai.012G068200.1Gorai.012G068200.2
Gorai.002G136400.3Gorai.012G068200.3Gorai.007G264000.1
Linum usitatissimumLus10003292Lus10030323Lus10022251Lus10030348Lus10007899
Malus domesticaMDP0000798095MDP0000262060.270.444MDP0000262060.270.444MDP0000564236MDP0000262060.174.257
MDP0000262060.174.257
Manihot esculentacassava4.1_033827mcassava4.1_033064mcassava4.1_004406mcassava4.1_007813mcassava4.1_023099m
cassava4.1_021615m
Medicago truncatulaMedtr2g062560.1
Mimulus guttatusmgv1a004365mmgv1a003720mmgv1a007861mmgv1a003512mmgv1a023788m
Oryza sativaLOC_Os01g66700.1LOC_Os05g34320.2LOC_Os05g34320.1LOC_Os05g02510.1LOC_Os05g34320.3
LOC_Os07g38790.1LOC_Os03g11980.1
Panicum virgatumPavirv00023753mPavirv00005093mPavirv00062644mPavirv00067910mPavirv00063863m
Pavirv00001875mPavirv00056279mPavirv00062645m.258.396Pavirv00062645m.258.396Pavirv00060770m
Pavirv00016511mPavirv00054866mPavirv00049460mPavirv00062645m.174.254Pavirv00062645m.174.254
Physcomitrella patensPp1s70_132V6.1Pp1s3_199V6.1
Phaseolus vulgarisPhvul.008G015400.1Phvul.007G010100.1Phvul.005G045300.1Phvul.005G043200.1
Picea abiesMA_177334g0010MA_271570g0010MA_92690g0010.179.289MA_92690g0010.179.289MA_92690g0010.297.429
MA_92690g0010.297.429
Populus trichocarpaPotri.008G079400.2Potri.008G079400.1Potri.010G211000.2Potri.010G211000.1Potri.010G211000.4
Potri.010G211000.3Potri.008G079400.5Potri.008G079400.3Potri.008G079400.4Potri.001G232800.1
Potri.001G232600.1
Prunus persicappa003880mppa002753m
Ricinus communis29929.m00450328180.m00037729616.m00021628180.m00037634575.m000024
47890.m000013
Setaria italicaSi001028mSi021738mSi024695mSi021693mSi029311m
Si034794m
Selaginella moellendorffii117332429308422139422155445016
422160429325441789422260
Sorghum bicolorSb09g020420.2Sb09g020420.1Sb09g001670.1Sb02g037280.1Sb01g042640.1
Thellungiella halophilaThhalv10018379mThhalv10010264mThhalv10007181mThhalv10007179m
Vitis viniferaGSVIVT01016639001GSVIVT01006264001GSVIVT01004010001GSVIVT01006000001
Volvox carteriVocar20013124m
Sequence Alignments  (This image is cropped. Click for full image.)
Phylogeny  (This image is cropped. Click for full image.)