Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00062692m |
Family | GT47 |
Protein Properties | Length: 474 Molecular Weight: 52202.9 Isoelectric Point: 9.7359 |
Chromosome | Chromosome/Scaffold: 002182 Start: 10558 End: 12318 |
Description | Exostosin family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT47 | 138 | 424 | 0 |
ERKFKIWAYREGEPPLVHLGPGADIYSIEGQFLEEMEDPRNPFAARDPGEAHAFLLPISVCNLVHYVYRLNTTARVEPMRRMLSDYIDVVAAKYPYWNRS RGADHVIVSCHDWGPLVSEGNRELYANAIRVLCNANTSEGFRPRKDATLPEVHLADGILRRPTFGLPPENRTTLAFFAGGMHGHIRKALLGHWLGRQDPG GMDVHEYLPAGQDDYHARMARARFCLCPSGFEVASPRVVESVFAGCVPVIISDGYPPPFGDVLDWGKMSVAVPPARIPELKAILEGV |
Full Sequence |
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Protein Sequence Length: 474 Download |
MENGGGGGGG RVAATAVPLV AVALLASAFV LPGPAAFLGG ESAASREHFL RHVPHEPQKP 60 AARVPASTPP AAGKVSVGPI EEGLARSRAA IRRAAREAPA AAAESARRSF KDVGDAFVPR 120 GAIYRNPRAF HRSYLEMERK FKIWAYREGE PPLVHLGPGA DIYSIEGQFL EEMEDPRNPF 180 AARDPGEAHA FLLPISVCNL VHYVYRLNTT ARVEPMRRML SDYIDVVAAK YPYWNRSRGA 240 DHVIVSCHDW GPLVSEGNRE LYANAIRVLC NANTSEGFRP RKDATLPEVH LADGILRRPT 300 FGLPPENRTT LAFFAGGMHG HIRKALLGHW LGRQDPGGMD VHEYLPAGQD DYHARMARAR 360 FCLCPSGFEV ASPRVVESVF AGCVPVIISD GYPPPFGDVL DWGKMSVAVP PARIPELKAI 420 LEGVSERRYR VLRARVLQAQ RHFVMHRPAQ RFDVINMVLH SIWLRRLNVR LPY* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam13692 | Glyco_trans_1_4 | 0.007 | 314 | 403 | 92 | + Glycosyl transferases group 1. | ||
pfam03016 | Exostosin | 2.0e-67 | 137 | 424 | 306 | + Exostosin family. The EXT family is a family of tumour suppressor genes. Mutations of EXT1 on 8q24.1, EXT2 on 11p11-13, and EXT3 on 19p have been associated with the autosomal dominant disorder known as hereditary multiple exostoses (HME). This is the most common known skeletal dysplasia. The chromosomal locations of other EXT genes suggest association with other forms of neoplasia. EXT1 and EXT2 have both been shown to encode a heparan sulphate polymerase with both D-glucuronyl (GlcA) and N-acetyl-D-glucosaminoglycan (GlcNAC) transferase activities. The nature of the defect in heparan sulphate biosynthesis in HME is unclear. |
Gene Ontology | |
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GO Term | Description |
GO:0016020 | membrane |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAD19700.1 | 0 | 137 | 473 | 1 | 345 | exostosin-like protein [Oryza sativa Japonica Group] |
GenBank | EAY86665.1 | 0 | 39 | 473 | 35 | 482 | hypothetical protein OsI_08049 [Oryza sativa Indica Group] |
RefSeq | NP_197526.4 | 0 | 67 | 472 | 14 | 408 | catalytic [Arabidopsis thaliana] |
Swiss-Prot | Q3E9A4 | 0 | 67 | 472 | 72 | 466 | GLYT5_ARATH RecName: Full=Probable glycosyltransferase At5g20260 |
RefSeq | XP_002454169.1 | 0 | 137 | 473 | 1 | 338 | hypothetical protein SORBIDRAFT_04g025885 [Sorghum bicolor] |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
xylogalacturonan biosynthesis | RXN-9589 | EC-2.4.2.41 | xylogalacturonan β-1,3-xylosyltransferase |