| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00063023m |
| Family | GH33 |
| Protein Properties | Length: 645 Molecular Weight: 70757.5 Isoelectric Point: 6.1823 |
| Chromosome | Chromosome/Scaffold: 001879 Start: 227 End: 5295 |
| Description | BNR/Asp-box repeat family protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
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| Family | Start | End | Evalue |
| GH33 | 98 | 386 | 1.2e-25 |
| RPFNNCHASTIVEIEKDNFLISYFGGSIEGAPDVKIWTQRYSDGYWHPPVVADEEIATAMWNPVLFQLPSRELLLFYKIGEHPQNWSSAMKRSLNGGMSW SEREQLPPGILGPIKNKPFLLDDGRLLCGSSVESWNSWGAWLEVTEDVGRTWRKYGPIYVEGEKLGVIQPVPYQTTNGTIRMLLRSYQTIGRVCIADSSD GGLTWGYARKTELPNPNSGIDGIKMKDGKVALAYNTVSRGILKVAVSSDDGISWGEVLTLENTEGVEFSYPAVIQTMDELIHVTYTYNR | |||
| Full Sequence |
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| Protein Sequence Length: 645 Download |
| MAIPTFCSLS KQHKWKITAC VMLFSVVLVA SDSPLRTFFS KYLSSIVPSS GSTDAATSTH 60 DKPGQQIEHG TYNMNTTSTN ATSGWSIVKE FTFPAVGRPF NNCHASTIVE IEKDNFLISY 120 FGGSIEGAPD VKIWTQRYSD GYWHPPVVAD EEIATAMWNP VLFQLPSREL LLFYKIGEHP 180 QNWSSAMKRS LNGGMSWSER EQLPPGILGP IKNKPFLLDD GRLLCGSSVE SWNSWGAWLE 240 VTEDVGRTWR KYGPIYVEGE KLGVIQPVPY QTTNGTIRML LRSYQTIGRV CIADSSDGGL 300 TWGYARKTEL PNPNSGIDGI KMKDGKVALA YNTVSRGILK VAVSSDDGIS WGEVLTLENT 360 EGVEFSYPAV IQTMDELIHV TYTYNRTQIK VGEEESGGDR AAQAVRGTGR GTSRARASSG 420 RRKVTYGFHL VEGRMPHGME DRHVAEFRQL DDGNEVGLFA VFDGHSGADV ATYLREHLFD 480 NILNEPDFDF WTDPMEAIRR AYHRTDRKVL KMKKAGDDEG EGKGKGNVNG RRRRGGSTAV 540 TVILINGETP VVANVGDSRA VLGDAGGAAR QLSVDHEPLR ERGAIESRGG FVTEVHGDVP 600 RVDAQLAMSR AFGDRSLKEH ISSDPDVCIE EVGDGAELVV LGSH* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG4692 | COG4692 | 4.0e-27 | 94 | 390 | 353 | + Predicted neuraminidase (sialidase) [Carbohydrate transport and metabolism] | ||
| pfam00481 | PP2C | 8.0e-36 | 437 | 644 | 216 | + Protein phosphatase 2C. Protein phosphatase 2C is a Mn++ or Mg++ dependent protein serine/threonine phosphatase. | ||
| smart00332 | PP2Cc | 4.0e-42 | 426 | 643 | 222 | + Serine/threonine phosphatases, family 2C, catalytic domain. The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity. | ||
| cd00143 | PP2Cc | 3.0e-45 | 439 | 644 | 211 | + Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity. | ||
| pfam13088 | BNR_2 | 2.0e-84 | 114 | 380 | 282 | + BNR repeat-like domain. This family of proteins contains BNR-like repeats suggesting these proteins may act as sialidases. | ||
| Gene Ontology | |
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| GO Term | Description |
| GO:0003824 | catalytic activity |
| Annotations - NR Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACG41080.1 | 0 | 74 | 373 | 1 | 301 | hypothetical protein [Zea mays] |
| GenBank | EEC82140.1 | 0 | 1 | 390 | 1 | 412 | hypothetical protein OsI_26191 [Oryza sativa Indica Group] |
| RefSeq | NP_001059779.1 | 0 | 1 | 390 | 1 | 412 | Os07g0516000 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001131252.1 | 0 | 72 | 373 | 2 | 304 | hypothetical protein LOC100192565 [Zea mays] |
| RefSeq | XP_002460769.1 | 0 | 5 | 390 | 3 | 400 | hypothetical protein SORBIDRAFT_02g034675 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3kdj_B | 2e-16 | 426 | 627 | 11 | 212 | B Chain B, Complex Structure Of (+)-Aba-Bound Pyl1 And A |
| PDB | 3nmn_D | 2e-16 | 426 | 627 | 14 | 215 | B Chain B, Crystal Structure Of Pyrabactin-Bound Abscisic Acid Receptor Pyl1 In Complex With Type 2c Protein Phosphatase Abi1 |
| PDB | 3nmn_B | 2e-16 | 426 | 627 | 14 | 215 | B Chain B, Crystal Structure Of Pyrabactin-Bound Abscisic Acid Receptor Pyl1 In Complex With Type 2c Protein Phosphatase Abi1 |
| PDB | 3jrq_A | 3e-16 | 426 | 627 | 26 | 227 | B Chain B, Crystal Structure Of (+)-aba-bound Pyl1 In Complex With A |
| PDB | 3ujl_B | 0.000000000000008 | 430 | 627 | 44 | 221 | A Chain A, Crystal Structure Of Abscisic Acid Bound Pyl2 In Complex With Type 2c Protein Phosphatase Abi2 |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| JG813383 | 252 | 96 | 347 | 0 |
| FF344386 | 262 | 126 | 387 | 0 |
| EL689016 | 283 | 99 | 381 | 0 |
| JG862817 | 223 | 86 | 307 | 0 |
| FL711089 | 210 | 1 | 210 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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