Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00063043m |
Family | CBM43 |
Protein Properties | Length: 458 Molecular Weight: 49669.3 Isoelectric Point: 4.6982 |
Chromosome | Chromosome/Scaffold: 001249 Start: 25753 End: 27288 |
Description | O-Glycosyl hydrolases family 17 protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 342 | 423 | 1.9e-24 |
WCVVNTESPNMDKLADNINFACTFADCTALGYGSTCGGMDSNGNASYAFNAFFQMKDQADESCDFQGLARPTQTDPSTPACN | |||
GH17 | 5 | 319 | 0 |
RRRRTPSSPKVVVQMLKDNGIKKVKLFDADQATLSALAGSGIEVMVAIPNVLLDRITDYDTAKEWVRHNVSRYNFDGGVTIKYVAVGNEPFLAAYNGTFD KVTFPALQNIQNALDEAGLGDSIKATVPLNADVYMSPADNPVPSAGRWRPDIADLMTQMVQFLSNHSAPFTVNIYPFISLFLNDNFPVDFAFFDGGATPV VDNGVSYTNVFDANFDTLVAALKASGHGDMPIVVGEVGWPTDGDKHATTAYAQRFYSGLLRRLAANAGTPVRPNQYIEVYLFGLLDEDIKSVAPGNFERH WGILRYDGQPKFPMD |
Full Sequence |
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Protein Sequence Length: 458 Download |
MNWVRRRRTP SSPKVVVQML KDNGIKKVKL FDADQATLSA LAGSGIEVMV AIPNVLLDRI 60 TDYDTAKEWV RHNVSRYNFD GGVTIKYVAV GNEPFLAAYN GTFDKVTFPA LQNIQNALDE 120 AGLGDSIKAT VPLNADVYMS PADNPVPSAG RWRPDIADLM TQMVQFLSNH SAPFTVNIYP 180 FISLFLNDNF PVDFAFFDGG ATPVVDNGVS YTNVFDANFD TLVAALKASG HGDMPIVVGE 240 VGWPTDGDKH ATTAYAQRFY SGLLRRLAAN AGTPVRPNQY IEVYLFGLLD EDIKSVAPGN 300 FERHWGILRY DGQPKFPMDL TGQGQNAMLV PARGVEYLPR TWCVVNTESP NMDKLADNIN 360 FACTFADCTA LGYGSTCGGM DSNGNASYAF NAFFQMKDQA DESCDFQGLA RPTQTDPSTP 420 ACNLTIQIAT TSAAAPCLAA AAAALLFLAQ LMMILLH* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00925 | GTP_cyclohydro2 | 0.006 | 15 | 53 | 39 | + GTP cyclohydrolase II. GTP cyclohydrolase II catalyzes the first committed step in the biosynthesis of riboflavin. | ||
COG5309 | COG5309 | 2.0e-5 | 193 | 311 | 125 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
pfam07983 | X8 | 3.0e-18 | 341 | 410 | 77 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 2.0e-29 | 341 | 423 | 85 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
pfam00332 | Glyco_hydro_17 | 3.0e-69 | 12 | 319 | 310 | + Glycosyl hydrolases family 17. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACG29689.1 | 0 | 1 | 438 | 23 | 462 | glucan endo-1,3-beta-glucosidase 5 precursor [Zea mays] |
RefSeq | NP_001051526.1 | 0 | 1 | 434 | 36 | 469 | Os03g0792800 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001058984.1 | 0 | 2 | 428 | 28 | 451 | Os07g0168600 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002459388.1 | 0 | 1 | 440 | 31 | 471 | hypothetical protein SORBIDRAFT_02g003910 [Sorghum bicolor] |
RefSeq | XP_002463758.1 | 0 | 1 | 434 | 33 | 470 | hypothetical protein SORBIDRAFT_01g005610 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3f55_D | 0 | 16 | 321 | 19 | 316 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |
PDB | 3f55_C | 0 | 16 | 321 | 19 | 316 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |
PDB | 3f55_B | 0 | 16 | 321 | 19 | 316 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |
PDB | 3f55_A | 0 | 16 | 321 | 19 | 316 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |
PDB | 3em5_D | 0 | 16 | 321 | 19 | 316 | A Chain A, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev B 2), A Major Allergen From Hevea Brasiliensis |