| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00063196m |
| Family | GH2 |
| Protein Properties | Length: 981 Molecular Weight: 110420 Isoelectric Point: 6.3655 |
| Chromosome | Chromosome/Scaffold: 001995 Start: 113 End: 7189 |
| Description | glycoside hydrolase family 2 protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH2 | 39 | 767 | 0 |
| DPEPAAPWMSAAVPGTVLGTLLKNKLIPDPFYGLNNQAIVDIADAGREYYTFWFFTTFQCAPSGNQHVTLNFQGINYSAEMYLNGHKEVLPKGMFRRHNI DITDILHPDGNNLLAVLVHPPDHPGRIPPQGGQGGDHEIGKDVATQYVEGWDWMCPIRDRNTGIWDEVSISITGPVNIMDPHLVSTFHDDFKRSYLHCTL QLENKSSWIADCTLKIQVSTELEGNICLVEHLQSYALRIPPHSDVEYTIPPLFFYKPNLWWPNGMGKQSLYNVEINVDVKGFGESDSWSHYFGFRKIEST IDDSTGGRIFKVNGEPIFIRGGNWILSDGLLRLTKKRYMTDIKFHADMNFNMLRCWGGGLAERPDFYHFCDVYGLMVWQEFWITGDVDGRGIPVSNPNGP LDHDLFLLCARDTVKLLRNHASLALWVGGNEQVPPVDINKALKSDLKLHPMFASSQASDSQEKHLSEESTDPSKYLDGTRVYVQGSMWDGFANGKGDFTD GPYEIQYPESFFKDSFYKYGFNPEVGSVGVPVAETIRATMPPEGWSIPIFKKRIDGYIEEVPNPIWGYHKFIPYSKPGKVHDQIELYGHPKDLDDFCAKA QLVNYTQYRALLEGWTSFMWTKFTGVLIWKTQNPWTGLRGQFYDHLQDQTAGFYGCRCAAEPIHVQLNLASYFIEVVNTTADELADVAVEISVWDLDGTS PYYKVTEKIVIPPKKVKQIMEMKYPKMKD | |||
| Full Sequence |
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| Protein Sequence Length: 981 Download |
| MAAAAVGKRL LDTGWLAARS TEVALTGVQL TTTQPPAADP EPAAPWMSAA VPGTVLGTLL 60 KNKLIPDPFY GLNNQAIVDI ADAGREYYTF WFFTTFQCAP SGNQHVTLNF QGINYSAEMY 120 LNGHKEVLPK GMFRRHNIDI TDILHPDGNN LLAVLVHPPD HPGRIPPQGG QGGDHEIGKD 180 VATQYVEGWD WMCPIRDRNT GIWDEVSISI TGPVNIMDPH LVSTFHDDFK RSYLHCTLQL 240 ENKSSWIADC TLKIQVSTEL EGNICLVEHL QSYALRIPPH SDVEYTIPPL FFYKPNLWWP 300 NGMGKQSLYN VEINVDVKGF GESDSWSHYF GFRKIESTID DSTGGRIFKV NGEPIFIRGG 360 NWILSDGLLR LTKKRYMTDI KFHADMNFNM LRCWGGGLAE RPDFYHFCDV YGLMVWQEFW 420 ITGDVDGRGI PVSNPNGPLD HDLFLLCARD TVKLLRNHAS LALWVGGNEQ VPPVDINKAL 480 KSDLKLHPMF ASSQASDSQE KHLSEESTDP SKYLDGTRVY VQGSMWDGFA NGKGDFTDGP 540 YEIQYPESFF KDSFYKYGFN PEVGSVGVPV AETIRATMPP EGWSIPIFKK RIDGYIEEVP 600 NPIWGYHKFI PYSKPGKVHD QIELYGHPKD LDDFCAKAQL VNYTQYRALL EGWTSFMWTK 660 FTGVLIWKTQ NPWTGLRGQF YDHLQDQTAG FYGCRCAAEP IHVQLNLASY FIEVVNTTAD 720 ELADVAVEIS VWDLDGTSPY YKVTEKIVIP PKKVKQIMEM KYPKMKDAKP VYFLLLKLFR 780 LSDNGILSRN FYWLHLPGKD YKLLEQYQQK RIPLQIYSEI SVSGTKHQVR MIVENKSTKP 840 VAESIHPASA TNDQGDVSGS HNTGKETTRE GNESGGLWSK IRSGLGVLRS SDNLRTLEVK 900 GTDSGIAFFL HFSVHTSGSS TTMEKYNDTR ILPVHYSDNY FSLTPGEKTS IDISFEAAPG 960 SGPRVVLRGW NHHLDHTVMI * |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PRK09525 | lacZ | 0.001 | 94 | 469 | 417 | + beta-D-galactosidase; Reviewed | ||
| pfam02837 | Glyco_hydro_2_N | 3.0e-7 | 89 | 157 | 70 | + Glycosyl hydrolases family 2, sugar binding domain. This family contains beta-galactosidase, beta-mannosidase and beta-glucuronidase activities and has a jelly-roll fold. | ||
| pfam00703 | Glyco_hydro_2 | 2.0e-11 | 216 | 333 | 118 | + Glycosyl hydrolases family 2. This family contains beta-galactosidase, beta-mannosidase and beta-glucuronidase activities. | ||
| PRK10340 | ebgA | 7.0e-12 | 103 | 469 | 389 | + cryptic beta-D-galactosidase subunit alpha; Reviewed | ||
| COG3250 | LacZ | 3.0e-31 | 50 | 469 | 429 | + Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism] | ||
| Gene Ontology | |
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| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | EEC79162.1 | 0 | 6 | 980 | 16 | 985 | hypothetical protein OsI_19836 [Oryza sativa Indica Group] |
| RefSeq | NP_001055444.1 | 0 | 7 | 980 | 16 | 984 | Os05g0391500 [Oryza sativa (japonica cultivar-group)] |
| Swiss-Prot | Q5H7P5 | 0 | 6 | 976 | 1 | 949 | EBM_LILLO RecName: Full=Mannosylglycoprotein endo-beta-mannosidase; Short=Endo-beta-mannosidase; Contains: RecName: Full=Mannosylglycoprotein endo-beta-mannosidase 31 kDa subunit; Contains: RecName: Full=Mannosylglycoprotein endo-beta-mannosidase 28 kDa subunit; Contains: RecName: Full=Mannosylglycoprotein endo-beta-mannosidase 42 kDa subunit |
| RefSeq | XP_002319539.1 | 0 | 4 | 978 | 2 | 972 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002439742.1 | 0 | 3 | 980 | 2 | 978 | hypothetical protein SORBIDRAFT_09g019350 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2vzo_B | 0 | 42 | 794 | 77 | 767 | A Chain A, Crystal Structure Of Amycolatopsis Orientalis Exo- Chitosanase Csxa |
| PDB | 2vzo_A | 0 | 42 | 794 | 77 | 767 | A Chain A, Crystal Structure Of Amycolatopsis Orientalis Exo- Chitosanase Csxa |
| PDB | 2x09_B | 0 | 42 | 794 | 77 | 767 | A Chain A, Crystal Structure Of Amycolatopsis Orientalis Exo- Chitosanase Csxa |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| GO871600 | 333 | 305 | 637 | 0 |
| ES793920 | 367 | 378 | 742 | 0 |
| GO847639 | 329 | 522 | 850 | 0 |
| GO848159 | 317 | 174 | 490 | 0 |
| CK208936 | 346 | 446 | 791 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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