| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00063197m |
| Family | GH2 |
| Protein Properties | Length: 863 Molecular Weight: 97804.9 Isoelectric Point: 6.4854 |
| Chromosome | Chromosome/Scaffold: 001995 Start: 113 End: 6767 |
| Description | glycoside hydrolase family 2 protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
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| Family | Start | End | Evalue |
| GH2 | 2 | 649 | 0 |
| YLNGHKEVLPKGMFRRHNIDITDILHPDGNNLLAVLVHPPDHPGRIPPQGGQGGDHEIGKDVATQYVEGWDWMCPIRDRNTGIWDEVSISITGPVNIMDP HLVSTFHDDFKRSYLHCTLQLENKSSWIADCTLKIQVSTELEGNICLVEHLQSYALRIPPHSDVEYTIPPLFFYKPNLWWPNGMGKQSLYNVEINVDVKG FGESDSWSHYFGFRKIESTIDDSTGGRIFKVNGEPIFIRGGNWILSDGLLRLTKKRYMTDIKFHADMNFNMLRCWGGGLAERPDFYHFCDVYGLMVWQEF WITGDVDGRGIPVSNPNGPLDHDLFLLCARDTVKLLRNHASLALWVGGNEQVPPVDINKALKSDLKLHPMFASSQASDSQEKHLSEESTDPSKYLDGTRV YVQGSMWDGFANGKGDFTDGPYEIQYPESFFKDSFYKYGFNPEVGSVGVPVAETIRATMPPEGWSIPIFKKRIDGYIEEVPNPIWGYHKFIPYSKPGKVH DQIELYGHPKDLDDFCAKAQLVNYTQYRALLEGWTSFMWTKFTGVLIWKTQNPWTGLRGQFYDHLQDQTAGFYGCRCAAEPIHVQLNLASYFIEVVNTTA DELADVAVEISVWDLDGTSPYYKVTEKIVIPPKKVKQIMEMKYPKMKD | |||
| Full Sequence |
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| Protein Sequence Length: 863 Download |
| MYLNGHKEVL PKGMFRRHNI DITDILHPDG NNLLAVLVHP PDHPGRIPPQ GGQGGDHEIG 60 KDVATQYVEG WDWMCPIRDR NTGIWDEVSI SITGPVNIMD PHLVSTFHDD FKRSYLHCTL 120 QLENKSSWIA DCTLKIQVST ELEGNICLVE HLQSYALRIP PHSDVEYTIP PLFFYKPNLW 180 WPNGMGKQSL YNVEINVDVK GFGESDSWSH YFGFRKIEST IDDSTGGRIF KVNGEPIFIR 240 GGNWILSDGL LRLTKKRYMT DIKFHADMNF NMLRCWGGGL AERPDFYHFC DVYGLMVWQE 300 FWITGDVDGR GIPVSNPNGP LDHDLFLLCA RDTVKLLRNH ASLALWVGGN EQVPPVDINK 360 ALKSDLKLHP MFASSQASDS QEKHLSEEST DPSKYLDGTR VYVQGSMWDG FANGKGDFTD 420 GPYEIQYPES FFKDSFYKYG FNPEVGSVGV PVAETIRATM PPEGWSIPIF KKRIDGYIEE 480 VPNPIWGYHK FIPYSKPGKV HDQIELYGHP KDLDDFCAKA QLVNYTQYRA LLEGWTSFMW 540 TKFTGVLIWK TQNPWTGLRG QFYDHLQDQT AGFYGCRCAA EPIHVQLNLA SYFIEVVNTT 600 ADELADVAVE ISVWDLDGTS PYYKVTEKIV IPPKKVKQIM EMKYPKMKDA KPVYFLLLKL 660 FRLSDNGILS RNFYWLHLPG KDYKLLEQYQ QKRIPLQIYS EISVSGTKHQ VRMIVENKST 720 KPVAESIHPA SATNDQGDVS GSHNTGKETT REGNESGGLW SKIRSGLGVL RSSDNLRTLE 780 VKGTDSGIAF FLHFSVHTSG SSTTMEKYND TRILPVHYSD NYFSLTPGEK TSIDISFEAA 840 PGSGPRVVLR GWNHHLDHTV MI* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PRK09525 | lacZ | 0.005 | 21 | 351 | 362 | + beta-D-galactosidase; Reviewed | ||
| PRK10340 | ebgA | 2.0e-9 | 1 | 351 | 373 | + cryptic beta-D-galactosidase subunit alpha; Reviewed | ||
| pfam00703 | Glyco_hydro_2 | 2.0e-11 | 98 | 215 | 118 | + Glycosyl hydrolases family 2. This family contains beta-galactosidase, beta-mannosidase and beta-glucuronidase activities. | ||
| COG3250 | LacZ | 5.0e-26 | 1 | 351 | 356 | + Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism] | ||
| Gene Ontology | |
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| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAO27794.1 | 0 | 1 | 861 | 115 | 976 | glycosyl hydrolase [Gossypium hirsutum] |
| GenBank | EEC79162.1 | 0 | 1 | 862 | 129 | 985 | hypothetical protein OsI_19836 [Oryza sativa Indica Group] |
| RefSeq | NP_001055444.1 | 0 | 1 | 862 | 128 | 984 | Os05g0391500 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002319539.1 | 0 | 1 | 860 | 114 | 972 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002439742.1 | 0 | 1 | 862 | 118 | 978 | hypothetical protein SORBIDRAFT_09g019350 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2vzo_B | 1.00053e-42 | 1 | 676 | 149 | 767 | A Chain A, Crystal Structure Of Amycolatopsis Orientalis Exo- Chitosanase Csxa |
| PDB | 2vzo_A | 1.00053e-42 | 1 | 676 | 149 | 767 | A Chain A, Crystal Structure Of Amycolatopsis Orientalis Exo- Chitosanase Csxa |
| PDB | 2x09_B | 4.99983e-42 | 1 | 676 | 149 | 767 | A Chain A, Crystal Structure Of Amycolatopsis Orientalis Exo- Chitosanase Csxa |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| GO871600 | 333 | 187 | 519 | 0 |
| ES793920 | 367 | 260 | 624 | 0 |
| GO847639 | 329 | 404 | 732 | 0 |
| GO848159 | 317 | 56 | 372 | 0 |
| CK208936 | 346 | 328 | 673 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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