Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00063328m |
Family | CE8 |
Protein Properties | Length: 379 Molecular Weight: 39807.1 Isoelectric Point: 6.3271 |
Chromosome | Chromosome/Scaffold: 002166 Start: 21619 End: 22755 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 11 | 226 | 0 |
GSTTVAVESDYFVALGVVFKNDAPLAKPGAKGGQAVALRLFGTKAALFNCTVDGGQDTLYDHKGLHYFKSCLIRGSVDFIFGFGRSFYDGCRIESVVKEV AVLTAQQRTKSIEGTIDSGFSFKNCSIGGVKGGQIYLGRPWGDSSRVVYAYTEMGEEVVPIGWDGWNVAKPESSGIYYGEFRCSGPGADAKKKKRVGWAL DLTEEQAKPFVGTHYI |
Full Sequence |
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Protein Sequence Length: 379 Download |
AGPWWARWGL GSTTVAVESD YFVALGVVFK NDAPLAKPGA KGGQAVALRL FGTKAALFNC 60 TVDGGQDTLY DHKGLHYFKS CLIRGSVDFI FGFGRSFYDG CRIESVVKEV AVLTAQQRTK 120 SIEGTIDSGF SFKNCSIGGV KGGQIYLGRP WGDSSRVVYA YTEMGEEVVP IGWDGWNVAK 180 PESSGIYYGE FRCSGPGADA KKKKRVGWAL DLTEEQAKPF VGTHYIFGDS WIQQPSPYGS 240 NAPAAAKKEN STTTADDQEA EAPTTAEAAG TNKTSATATK DAKAAGKTSG ATKYAEEETS 300 TPAAASKDAK AEKTTLAAKK EGEEETSTSA AASKDAKTEK TTSAATKDAE EETSTSTVAS 360 KDAKAEKTTS AAAKGTKE* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02432 | PLN02432 | 5.0e-55 | 12 | 233 | 222 | + putative pectinesterase | ||
PLN02671 | PLN02671 | 2.0e-63 | 12 | 233 | 223 | + pectinesterase | ||
PLN02304 | PLN02304 | 3.0e-64 | 12 | 233 | 230 | + probable pectinesterase | ||
PLN02665 | PLN02665 | 7.0e-75 | 12 | 238 | 228 | + pectinesterase family protein | ||
PLN02682 | PLN02682 | 1.0e-77 | 11 | 233 | 223 | + pectinesterase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACF82787.1 | 0 | 10 | 235 | 162 | 387 | unknown [Zea mays] |
RefSeq | NP_001068464.1 | 0 | 10 | 313 | 176 | 485 | Os11g0683700 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001068465.1 | 0 | 10 | 289 | 125 | 415 | Os11g0683800 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001144148.1 | 0 | 10 | 235 | 162 | 387 | hypothetical protein LOC100277001 [Zea mays] |
RefSeq | XP_002451275.1 | 0 | 10 | 235 | 169 | 395 | hypothetical protein SORBIDRAFT_05g026816 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1xg2_A | 8e-24 | 12 | 233 | 82 | 305 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 1gq8_A | 3e-23 | 10 | 233 | 84 | 309 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 3uw0_A | 0.000000000005 | 2 | 229 | 103 | 360 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_B | 0.00000000007 | 6 | 229 | 81 | 336 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_A | 0.00000000007 | 6 | 229 | 81 | 336 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DR788646 | 221 | 15 | 235 | 0 |
EB706192 | 213 | 23 | 235 | 0 |
CX099544 | 226 | 10 | 235 | 0 |
DY240018 | 206 | 28 | 233 | 0 |
CO528167 | 204 | 32 | 235 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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