Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00063415m |
Family | GH28 |
Protein Properties | Length: 498 Molecular Weight: 53553.8 Isoelectric Point: 6.623 |
Chromosome | Chromosome/Scaffold: 022457 Start: 4119 End: 7782 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 126 | 470 | 0 |
CGRGATLEVPPGRWLTGSFNLTSRFTLFLHHGALILGSQDPEEWPLIAPLPSYGRGRERLGPRHISLIHGEGLNDVVVTGNNGTIDGQGEMWWELWWNRT LNHTRGHLVELTNSTNILISNITLRNSPFWTVHPVYSSNVVMKDLTILAPLNAPNTDGIDPDSSSEVCIEDCYIESGDDLVAVKSGWDQYGISVGKPSTN IVIQRVSGTTPTCSGVGFGSEMSGGISNVLVRDLHVWNSAQAVRLKTDVGRGGYITNITITNVTMEKVKVPIRFSRGADDHSDDNYDRTALPRISNVLIS GIVGVDLQRAPMLEAVAGAVYEGICFRNVSLRGIRRQGRWHCESV |
Full Sequence |
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Protein Sequence Length: 498 Download |
MRVAHSLLPR LQFMAAHDPS SPLPWPRPAP LLLLLLALLA ASYLALTRLP PAAPLSALLI 60 AAHPPPPAAP RGEPPATSSC AGFYAGAGPA RAVSASVEEF GAVGDGVTSN TAAFRRAVAE 120 LDERACGRGA TLEVPPGRWL TGSFNLTSRF TLFLHHGALI LGSQDPEEWP LIAPLPSYGR 180 GRERLGPRHI SLIHGEGLND VVVTGNNGTI DGQGEMWWEL WWNRTLNHTR GHLVELTNST 240 NILISNITLR NSPFWTVHPV YSSNVVMKDL TILAPLNAPN TDGIDPDSSS EVCIEDCYIE 300 SGDDLVAVKS GWDQYGISVG KPSTNIVIQR VSGTTPTCSG VGFGSEMSGG ISNVLVRDLH 360 VWNSAQAVRL KTDVGRGGYI TNITITNVTM EKVKVPIRFS RGADDHSDDN YDRTALPRIS 420 NVLISGIVGV DLQRAPMLEA VAGAVYEGIC FRNVSLRGIR RQGRWHCESV YGEAHGVFPA 480 PCEELRENRS SSWCGFS* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 1.0e-21 | 94 | 458 | 381 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 2.0e-22 | 97 | 482 | 413 | + Probable polygalacturonase | ||
PLN03003 | PLN03003 | 5.0e-26 | 97 | 429 | 358 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 1.0e-30 | 200 | 458 | 268 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 9.0e-61 | 95 | 407 | 338 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | EAZ05322.1 | 0 | 79 | 497 | 63 | 482 | hypothetical protein OsI_27527 [Oryza sativa Indica Group] |
GenBank | EAZ41253.1 | 0 | 79 | 497 | 63 | 482 | hypothetical protein OsJ_25761 [Oryza sativa Japonica Group] |
RefSeq | NP_001060796.1 | 0 | 79 | 497 | 63 | 482 | Os08g0107300 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001148255.1 | 0 | 34 | 496 | 32 | 492 | polygalacturonase [Zea mays] |
RefSeq | XP_002443718.1 | 0 | 17 | 496 | 16 | 496 | hypothetical protein SORBIDRAFT_07g000740 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 6.99949e-42 | 89 | 460 | 24 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 6.99949e-42 | 89 | 460 | 24 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 6.99949e-42 | 89 | 460 | 24 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 6.99949e-42 | 89 | 460 | 24 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 9e-17 | 208 | 397 | 117 | 308 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
FL761876 | 254 | 137 | 390 | 0 |
FF588441 | 236 | 141 | 376 | 0 |
HX186729 | 243 | 242 | 484 | 0 |
CJ809401 | 245 | 253 | 496 | 0 |
HO798662 | 300 | 189 | 488 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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