| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00063696m |
| Family | GT43 |
| Protein Properties | Length: 384 Molecular Weight: 43173.4 Isoelectric Point: 9.7416 |
| Chromosome | Chromosome/Scaffold: 022122 Start: 349 End: 3326 |
| Description | Nucleotide-diphospho-sugar transferases superfamily protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GT43 | 145 | 357 | 0 |
| MGQTLLLVDPPLLWVVVQAGEPTPEAAAALRRTTVMHRYVGCCDNLNASSSSSADDLRPRQMNAALDLVENHRLDGIVYFAHEEGVYSLDLFQRLRQIRR FGTWPVPVVSENRKDGVVLEGPVCKQNQVVGWHTSEGHSKLRRFHVAMSGFAFNSTMLWDPKLRSHVAWNSIRHPEMVKEGFQGTTFVEQLVEDESQMEG IPADCSRIMNWHV | |||
| Full Sequence |
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| Protein Sequence Length: 384 Download |
| MASIRRPHSP AKQHLLRYHH PFASSSPPSS PLRHSSSSSS SPRTHHHNLY PHPFLFLSRR 60 PLPRFAAFFL LGSFLGLLHF LSHLPHTPHI RPADPVAAAA GLRQHLQLPI RVPDDDDADD 120 TRKKLLIVVT PTRARAAQAY YLSRMGQTLL LVDPPLLWVV VQAGEPTPEA AAALRRTTVM 180 HRYVGCCDNL NASSSSSADD LRPRQMNAAL DLVENHRLDG IVYFAHEEGV YSLDLFQRLR 240 QIRRFGTWPV PVVSENRKDG VVLEGPVCKQ NQVVGWHTSE GHSKLRRFHV AMSGFAFNST 300 MLWDPKLRSH VAWNSIRHPE MVKEGFQGTT FVEQLVEDES QMEGIPADCS RIMNWHVPFG 360 SENLAYPKGW RVGTNLDVII PLK* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02458 | PLN02458 | 5.0e-41 | 123 | 359 | 242 | + transferase, transferring glycosyl groups | ||
| pfam03360 | Glyco_transf_43 | 2.0e-45 | 145 | 356 | 218 | + Glycosyltransferase family 43. | ||
| cd00218 | GlcAT-I | 4.0e-64 | 124 | 356 | 239 | + Beta1,3-glucuronyltransferase I (GlcAT-I) is involved in the initial steps of proteoglycan synthesis. Beta1,3-glucuronyltransferase I (GlcAT-I) domain; GlcAT-I is a Key enzyme involved in the initial steps of proteoglycan synthesis. GlcAT-I catalyzes the transfer of a glucuronic acid moiety from the uridine diphosphate-glucuronic acid (UDP-GlcUA) to the common linkage region of trisaccharide Gal-beta-(1-3)-Gal-beta-(1-4)-Xyl of proteoglycans. The enzyme has two subdomains that bind the donor and acceptor substrate separately. The active site is located at the cleft between both subdomains in which the trisaccharide molecule is oriented perpendicular to the UDP. This family has been classified as Glycosyltransferase family 43 (GT-43). | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0015018 | galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity |
| GO:0016020 | membrane |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACN34753.1 | 0 | 1 | 331 | 1 | 339 | unknown [Zea mays] |
| EMBL | CAH65757.1 | 0 | 1 | 383 | 1 | 381 | OSIGBa0123D13.6 [Oryza sativa (indica cultivar-group)] |
| RefSeq | NP_001051997.1 | 0 | 1 | 383 | 1 | 381 | Os04g0103100 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001131482.1 | 0 | 1 | 383 | 1 | 387 | hypothetical protein LOC100192819 [Zea mays] |
| RefSeq | XP_002446005.1 | 0 | 1 | 383 | 1 | 385 | hypothetical protein SORBIDRAFT_06g000430 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1v84_B | 6e-22 | 128 | 357 | 7 | 231 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
| PDB | 1v84_A | 6e-22 | 128 | 357 | 7 | 231 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
| PDB | 1v83_B | 6e-22 | 128 | 357 | 7 | 231 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
| PDB | 1v83_A | 6e-22 | 128 | 357 | 7 | 231 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
| PDB | 1v82_B | 6e-22 | 128 | 357 | 7 | 231 | A Chain A, Crystal Structure Of Human Glcat-P Apo Form |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| DT646301 | 232 | 124 | 351 | 0 |
| EE046269 | 185 | 202 | 384 | 0 |
| BQ533223 | 153 | 232 | 384 | 0 |
| EB658211 | 148 | 237 | 384 | 0 |
| EB658200 | 145 | 240 | 384 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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