Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00063900m |
Family | GH35 |
Protein Properties | Length: 773 Molecular Weight: 86347.7 Isoelectric Point: 5.9222 |
Chromosome | Chromosome/Scaffold: 022358 Start: 2237 End: 7533 |
Description | beta galactosidase 1 |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH35 | 1 | 281 | 0 |
MWPDLIQKAKDGGLDVVQTYVFWNGHEPSPGQYYFEGRYDLVHFIKLVKQAGLYVHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNEPFKAEMQKFTT KIVDMMKSEGLFECQGGPIILSQIENEFGPLEWDQGEPARAYASWAANMAVALNTGVPWIMCKEDDAPDPIINTCNGFYCDWFSPNKPHKPTMWTEAWTA WYTGFGIPVPHRPVEDLAYGVAKFIQKGGSFVNYYMYHGGTNFERTAGGPFIATSYDYDAPIDEYGLLREPKWGHLKELHK |
Full Sequence |
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Protein Sequence Length: 773 Download |
MWPDLIQKAK DGGLDVVQTY VFWNGHEPSP GQYYFEGRYD LVHFIKLVKQ AGLYVHLRIG 60 PYVCAEWNFG GFPVWLKYVP GISFRTDNEP FKAEMQKFTT KIVDMMKSEG LFECQGGPII 120 LSQIENEFGP LEWDQGEPAR AYASWAANMA VALNTGVPWI MCKEDDAPDP IINTCNGFYC 180 DWFSPNKPHK PTMWTEAWTA WYTGFGIPVP HRPVEDLAYG VAKFIQKGGS FVNYYMYHGG 240 TNFERTAGGP FIATSYDYDA PIDEYGLLRE PKWGHLKELH KAIKLCEPAL VAGDPIVTSL 300 GNAQQASVFR SSTGACVAFL ENKDKVSYAR VAFNGMHYDL PPWSISILPD CKTTVYNTAR 360 VGSQISQMKM EWAGGFTWQS YNEDINSLGE ESFTTVGLLE QINVTRDKTD YLWYTTSVEI 420 AQDEQFLSNG KNPTLTVMSA GHALHIFING QLTGTVYGNV EDPRLTYRGN VKLWPGSNTI 480 SCLSIAVGLP NMGEHFETWN AGILGPVTLD GLNEGRRDLT WQKWTYQVGL KGETLSLHSL 540 TGSSSVEWGE PMQKQPLTWY KAFFNAPDGD EPLALDMSSM GKGQIWINGQ GIGRYWPGYK 600 ASGTCGICDY RGEYDDKKCQ INCGDSSQRW YHVPRSWLNP TGNLLVIFEE WGGDPTRISM 660 VKRTTGSVCA DVSEWQPSMK NWHTKDYEKA KIHLQCDHGR KITEIKFASF GTPQGSCGGY 720 SEGACHAHKS YDIFWKNCIG QERCGVSVVP DVFGGDPCPG KMKRAVVEAI CG* 780 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam02449 | Glyco_hydro_42 | 0.001 | 2 | 76 | 76 | + Beta-galactosidase. This group of beta-galactosidase enzymes belong to the glycosyl hydrolase 42 family. The enzyme catalyzes the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues. | ||
COG1874 | LacA | 2.0e-17 | 1 | 273 | 322 | + Beta-galactosidase [Carbohydrate transport and metabolism] | ||
pfam02140 | Gal_Lectin | 2.0e-18 | 694 | 771 | 81 | + Galactose binding lectin domain. | ||
pfam01301 | Glyco_hydro_35 | 3.0e-144 | 1 | 283 | 298 | + Glycosyl hydrolases family 35. | ||
PLN03059 | PLN03059 | 0 | 1 | 771 | 781 | + beta-galactosidase; Provisional |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0004565 | beta-galactosidase activity |
GO:0005529 | Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates." [CHEBI:16646, GOC:mah] |
GO:0005975 | carbohydrate metabolic process |
GO:0009341 | beta-galactosidase complex |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | EEC70952.1 | 0 | 1 | 772 | 53 | 822 | hypothetical protein OsI_02561 [Oryza sativa Indica Group] |
GenBank | EEE54862.1 | 0 | 1 | 772 | 68 | 839 | hypothetical protein OsJ_02342 [Oryza sativa Japonica Group] |
RefSeq | NP_001043405.1 | 0 | 1 | 772 | 56 | 827 | Os01g0580200 [Oryza sativa (japonica cultivar-group)] |
Swiss-Prot | P45582 | 0 | 1 | 771 | 57 | 831 | BGAL_ASPOF RecName: Full=Beta-galactosidase; Short=Lactase; Flags: Precursor |
RefSeq | XP_002455836.1 | 0 | 1 | 772 | 14 | 785 | hypothetical protein SORBIDRAFT_03g025990 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3d3a_A | 7e-38 | 2 | 279 | 39 | 325 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
PDB | 3d3a_A | 0.000002 | 412 | 596 | 385 | 546 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
PDB | 3thd_D | 2e-34 | 2 | 295 | 42 | 347 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
PDB | 3thd_C | 2e-34 | 2 | 295 | 42 | 347 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
lactose degradation III | BETAGALACTOSID-RXN | EC-3.2.1.23 | β-galactosidase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
HO778160 | 689 | 1 | 681 | 0 |
HO780602 | 657 | 21 | 664 | 0 |
HO795552 | 524 | 61 | 579 | 0 |
HO795552 | 51 | 22 | 72 | 2e-21 |
HO795552 | 22 | 1 | 22 | 2e-21 |
Sequence Alignments (This image is cropped. Click for full image.) |
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