Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00064003m |
Family | CBM43 |
Protein Properties | Length: 280 Molecular Weight: 26277.6 Isoelectric Point: 4.1344 |
Chromosome | Chromosome/Scaffold: 0222042 Start: 910 End: 1970 |
Description | Carbohydrate-binding X8 domain superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 95 | 175 | 2e-36 |
WCVASQSANPTALQVALDYACGYGADCSAIQQGGSCFNPDTVHDHASYAFNSYYQKNPVPTSCDFGGTATITTTDPSSGSC |
Full Sequence |
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Protein Sequence Length: 280 Download |
MLTTISVSKP SYPTVTTPMS TSTDPDSAPG IPSPTFPSFA AGDGGGGAGG VGGGGGAGTG 60 TGGGAGAGAG TGGGGGAGGG GGGGGGGGGG GGGTWCVASQ SANPTALQVA LDYACGYGAD 120 CSAIQQGGSC FNPDTVHDHA SYAFNSYYQK NPVPTSCDFG GTATITTTDP SSGSCRYPAS 180 SGGAQTMMPP PSPTTLPPAV PMTPTPTAPT TPDTSTTTTG TPVYGLSPPD YGSMSPPGYG 240 STSPPDYNDV GAAATAGQGR AALTLLCVLV ATISLHTSK* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam07983 | X8 | 3.0e-22 | 95 | 164 | 76 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 5.0e-40 | 95 | 177 | 84 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACG38222.1 | 0 | 1 | 279 | 39 | 297 | GPI-anchored protein [Zea mays] |
GenBank | EAY75064.1 | 0 | 96 | 275 | 93 | 276 | hypothetical protein OsI_02956 [Oryza sativa Indica Group] |
RefSeq | NP_001131448.1 | 0 | 1 | 279 | 42 | 297 | hypothetical protein LOC100192780 [Zea mays] |
RefSeq | NP_001142053.1 | 0 | 1 | 279 | 39 | 309 | hypothetical protein LOC100274209 [Zea mays] |
RefSeq | XP_002456008.1 | 0 | 1 | 279 | 40 | 310 | hypothetical protein SORBIDRAFT_03g028790 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2jon_A | 3e-18 | 91 | 182 | 9 | 101 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DR799828 | 153 | 95 | 246 | 0 |
DV520231 | 149 | 95 | 242 | 0 |
DR822132 | 91 | 95 | 185 | 0 |
EB640480 | 91 | 95 | 185 | 0 |
DR971407 | 91 | 95 | 185 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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