Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00064019m |
Family | CBM43 |
Protein Properties | Length: 440 Molecular Weight: 46879.1 Isoelectric Point: 7.0048 |
Chromosome | Chromosome/Scaffold: 022466 Start: 63 End: 1382 |
Description | O-Glycosyl hydrolases family 17 protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 314 | 395 | 1.4e-23 |
WCVLRPDASPSDPAIAGAVEYACEYSDCTSLGTGSSCGNLDARANVSYAFNQFFQAANQQKAACSFNNLSTIVTTDPSQGTC | |||
GH17 | 7 | 294 | 0 |
PPALRALGHSGIQVMLGLPNELLGPVAASVNAAEQWVLQNVSTYVSKYGVDIRYVAVGNEPFLKSYKGKFEAATLPAVQNVQAALLKAGLARQVHVTVPL NADVYESPDGKPSSGDFRPDIAGLMLSLVRFLLDNGGVLTINIYPFLSLYADPNFPMDYAFFPAPGAPPSQASVQDGNVLYTNVFDANYDTLIAALEKHG LGAIPVVVGEIGWPTDGAKNANAANAQRFNQGLFDRIIAGKGTPRRPRMPDVYVFALLDEDNKSVDPGNFERHWGVFNYDGSPKYRLN |
Full Sequence |
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Protein Sequence Length: 440 Download |
QALRGRPPAL RALGHSGIQV MLGLPNELLG PVAASVNAAE QWVLQNVSTY VSKYGVDIRY 60 VAVGNEPFLK SYKGKFEAAT LPAVQNVQAA LLKAGLARQV HVTVPLNADV YESPDGKPSS 120 GDFRPDIAGL MLSLVRFLLD NGGVLTINIY PFLSLYADPN FPMDYAFFPA PGAPPSQASV 180 QDGNVLYTNV FDANYDTLIA ALEKHGLGAI PVVVGEIGWP TDGAKNANAA NAQRFNQGLF 240 DRIIAGKGTP RRPRMPDVYV FALLDEDNKS VDPGNFERHW GVFNYDGSPK YRLNLAGGRP 300 IVPARGVRYL SKQWCVLRPD ASPSDPAIAG AVEYACEYSD CTSLGTGSSC GNLDARANVS 360 YAFNQFFQAA NQQKAACSFN NLSTIVTTDP SQGTCRFEIM IDTGRHELTG KSAAGRVASS 420 ATWSAVLALG LAGLVAAAW* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG5309 | COG5309 | 0.0001 | 208 | 286 | 82 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
pfam07983 | X8 | 6.0e-6 | 313 | 384 | 79 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 2.0e-19 | 313 | 397 | 87 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
pfam00332 | Glyco_hydro_17 | 6.0e-64 | 7 | 294 | 290 | + Glycosyl hydrolases family 17. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAP12947.1 | 0 | 7 | 408 | 65 | 466 | putative 1,3-beta-glucanase [Oryza sativa Japonica Group] |
GenBank | EAY90344.1 | 0 | 7 | 408 | 65 | 466 | hypothetical protein OsI_11921 [Oryza sativa Indica Group] |
RefSeq | NP_001147933.1 | 0 | 7 | 421 | 66 | 482 | glucan endo-1,3-beta-glucosidase 5 [Zea mays] |
RefSeq | XP_002467735.1 | 0 | 7 | 435 | 66 | 497 | hypothetical protein SORBIDRAFT_01g033200 [Sorghum bicolor] |
RefSeq | XP_002516181.1 | 0 | 1 | 429 | 72 | 494 | Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1ghr_A | 3.99931e-42 | 9 | 295 | 39 | 306 | A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With Glucose Dehydrogenase Activity |
PDB | 1aq0_B | 3.99931e-42 | 9 | 295 | 39 | 306 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
PDB | 1aq0_A | 3.99931e-42 | 9 | 295 | 39 | 306 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
PDB | 2cyg_A | 3e-40 | 9 | 295 | 39 | 312 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 1ghs_B | 1e-38 | 9 | 295 | 39 | 306 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
HO797198 | 413 | 7 | 417 | 0 |
EG389271 | 256 | 157 | 412 | 0 |
DT763058 | 289 | 63 | 347 | 0 |
AM721378 | 304 | 59 | 361 | 0 |
JG872839 | 291 | 66 | 354 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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