Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00064103m |
Family | PL1 |
Protein Properties | Length: 310 Molecular Weight: 34171.4 Isoelectric Point: 8.1232 |
Chromosome | Chromosome/Scaffold: 0224190 Start: 203 End: 1350 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 88 | 267 | 0 |
IVFDVSGTIRLSSGVRVSSYKTVDGRGRRVRLAGGGLELRECEHVILCGLEIAGGRGHDADAVQIKPRSRHVWVDRCTLRDFADGLVDITNGSTDVTVSR CHLAAHDKAVLVGGSSAHVEDRRIRVTIHHCFFDGTRQRHPRVRFGRVHLYNNYTRGWGIYAVCASVESQIISQCNIYEA |
Full Sequence |
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Protein Sequence Length: 310 Download |
MAPPPCDGQL GSELTTEDAR SLLPYATVDS SLRALAGQAE GFGRHAIGGL HGDVYHVTTL 60 EAHCQTDSAD DGPGSLREGC RKPEPLWIVF DVSGTIRLSS GVRVSSYKTV DGRGRRVRLA 120 GGGLELRECE HVILCGLEIA GGRGHDADAV QIKPRSRHVW VDRCTLRDFA DGLVDITNGS 180 TDVTVSRCHL AAHDKAVLVG GSSAHVEDRR IRVTIHHCFF DGTRQRHPRV RFGRVHLYNN 240 YTRGWGIYAV CASVESQIIS QCNIYEAGEK KNVFRYMEEQ GKVRFSTLNY QNRPILVIEL 300 RNRTSYTSN* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00544 | Pec_lyase_C | 2.0e-28 | 146 | 263 | 126 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
COG3866 | PelB | 2.0e-34 | 48 | 274 | 246 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
smart00656 | Amb_all | 6.0e-49 | 91 | 268 | 190 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN80964.1 | 0 | 15 | 280 | 40 | 297 | hypothetical protein [Vitis vinifera] |
EMBL | CBI32661.1 | 0 | 21 | 281 | 2 | 254 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002277576.1 | 0 | 15 | 281 | 40 | 298 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002309435.1 | 0 | 23 | 281 | 5 | 255 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002456600.1 | 0 | 1 | 281 | 1 | 273 | hypothetical protein SORBIDRAFT_03g039150 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 2e-40 | 29 | 267 | 15 | 270 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 2e-40 | 29 | 267 | 15 | 270 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1vbl_A | 5e-22 | 102 | 265 | 128 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 3zsc_A | 6e-22 | 47 | 265 | 22 | 246 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1bn8_A | 3e-18 | 102 | 264 | 144 | 345 | A Chain A, Bacillus Subtilis Pectate Lyase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
FC888541 | 259 | 23 | 281 | 0 |
DY271752 | 259 | 23 | 281 | 0 |
GR997119 | 272 | 9 | 280 | 0 |
DY289690 | 259 | 23 | 281 | 0 |
DR935272 | 255 | 23 | 277 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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