| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00064168m |
| Family | GH35 |
| Protein Properties | Length: 621 Molecular Weight: 66393.4 Isoelectric Point: 5.8938 |
| Chromosome | Chromosome/Scaffold: 022527 Start: 2 End: 4207 |
| Description | beta-galactosidase 8 |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH35 | 14 | 107 | 1.9e-37 |
| AAKPKMWTENWSGWFLSFGGAVPYRPAEDLAFAVARFYQRGGTFQNYYMYHGGTNLDRSAGGPFIATSYDYDAPIDEYGLVRQPKWGHLRDVHK | |||
| Full Sequence |
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| Protein Sequence Length: 621 Download |
| CNGFYCDGFT PNSAAKPKMW TENWSGWFLS FGGAVPYRPA EDLAFAVARF YQRGGTFQNY 60 YMYHGGTNLD RSAGGPFIAT SYDYDAPIDE YGLVRQPKWG HLRDVHKAIK LCEPALIATD 120 PSYISLGQNA EAAVYKAGSV CAAFLANIDG QSDKTVTFNG KMYKLPAWSV SILPDCKNVV 180 LNTAQINSQV TNSEMRYLES STVASDGSFT TPELAVSGWS YAIEPVGITK DNALTKAGLM 240 EQINTTADAS DFLWYSTSIT VKGDEPYLNG SQSNLLVSSL GHVLQVYVNG KIAGSAQGSA 300 SSSLISWQKS ITLVPGKNKI DLLSATVGLS NYGAFFDLVG AGITGPVKLS GPNGALDLSS 360 AQWTYQIGLR GEDLHLYDPS EASPEWVSSN AYPINQPLIW YKTKFTAPAG DDPVAIDFTG 420 LGKGEAWVNG QSIGRYWPTN IAPQSGCVNS CNYRGSYTSS KCLKKCGQPS QTLYHVPRSF 480 LQPGSNDIVL FEQFGGDPSK ISFVTRQTGS LCTQVSEAHP AQIDSWISSQ QKMQRSGPAL 540 RLECPKEGQV ISSIKFASFG TPSGTCGSYS HSECSSAQAL SVVQEACIGV SSCSIPVSSN 600 YFGDPCTGVT KSLAVEAACS * |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam02140 | Gal_Lectin | 1.0e-23 | 542 | 619 | 81 | + Galactose binding lectin domain. | ||
| pfam01301 | Glyco_hydro_35 | 7.0e-45 | 1 | 109 | 120 | + Glycosyl hydrolases family 35. | ||
| PLN03059 | PLN03059 | 0 | 1 | 620 | 625 | + beta-galactosidase; Provisional | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005529 | Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates." [CHEBI:16646, GOC:mah] |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABF95029.1 | 0 | 1 | 620 | 81 | 702 | Beta-galactosidase precursor, putative, expressed [Oryza sativa (japonica cultivar-group)] |
| GenBank | ACR35639.1 | 0 | 1 | 620 | 59 | 677 | unknown [Zea mays] |
| RefSeq | NP_001049591.1 | 0 | 1 | 620 | 335 | 956 | Os03g0255100 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001146370.1 | 0 | 1 | 620 | 234 | 852 | hypothetical protein LOC100279948 [Zea mays] |
| RefSeq | XP_002465536.1 | 0 | 1 | 620 | 241 | 860 | hypothetical protein SORBIDRAFT_01g040750 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3d3a_A | 0.000000009 | 17 | 105 | 234 | 325 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
| PDB | 3d3a_A | 0.0000008 | 246 | 500 | 374 | 578 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
| PDB | 4e8d_B | 0.000008 | 9 | 92 | 225 | 313 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
| PDB | 4e8d_B | 0.00003 | 285 | 508 | 411 | 586 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
| PDB | 4e8d_A | 0.000008 | 9 | 92 | 225 | 313 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| lactose degradation III | BETAGALACTOSID-RXN | EC-3.2.1.23 | β-galactosidase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| GO882786 | 357 | 234 | 590 | 0 |
| JG879971 | 300 | 317 | 616 | 0 |
| DN152613 | 277 | 1 | 277 | 0 |
| GT044618 | 335 | 223 | 555 | 0 |
| GT044618 | 23 | 545 | 567 | 0.1 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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